Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq22548 174 2e-38 >seq22548 Length=9234 Score = 174 bits (192), Expect = 2e-38 Identities = 609/940 (65%), Gaps = 27/940 (3%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 |||||||| | |||||| || | ||| | ||||| || ||| || || ||| Sbjct 4688 TTATGTCGCAAATACTCTTCCAAACATTTCACCGCAAAAGGGTCAACATCAGTGTCAAAC 4747 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || ||||| | ||| || ||| || ||||| || || || || | || || Sbjct 4748 TTATTAGCGAAGAAGTGGTG---GTTTCGCAGGATCCAGTTCAGGTCTCCTGCCCCAAAA 4804 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 || || || || || ||||| | |||||||| || || || | || || | | ||| Sbjct 4805 ACACAAACAGAGCGAACGTGAATTCCGCTGCATGGTGGGTAGGGTGCACCTTTGGACACG 4864 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || || || |||| |||||||| ||||| || | | || | ||||||||| ||||| Sbjct 4865 TCACCTTCAAAGTACTGCCACTTGACGAATCTGGCCAGCGCATTCATGTCGGAAATGTCG 4924 Query 162307 TACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||||| | || || || || || || || || | || | |||||| | || ||||| Sbjct 4925 TACTTGT-CGCTAGAAGGAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCA 4983 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 ||||| || ||||| || || || || || | |||||| || |||| | | |||| Sbjct 4984 CAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCGATCAACT---TAAGTATTTT 5040 Query 162426 ATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGA 162482 | | || | ||| || | ||| | || | ||| || || |||||||| Sbjct 5041 GCTGCTTTCTAACAGGTACTCTACAAATCTTCTGCTAACTACAAAATAAGCACTACCAGA 5100 Query 162483 AAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCC 162542 ||| | || | | | ||| || | | ||||||| || ||||| || | || Sbjct 5101 AAAAATTGGGGTACTGAGAGGTGGCAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTGCC 5160 Query 162543 CTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG----TGTT 162598 || | | | | || |||| |||| || ||| | || || || | || Sbjct 5161 ATCAATAATCTCATGATGCTTCTTCCATCT----TACTTCTTTATAAACAGGCATTTTTT 5216 Query 162599 CGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGC-ACCATCTCTAGATTG 162657 | || || | ||||| | || ||||| || | | | || || || | ||| Sbjct 5217 CCGTTTCCAAGCTGTTTACA-CCTTTAAGGCTTTTTAATTTCTCAACAATTTCCTGGTTG 5275 Query 162658 GTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGT 162717 ||||| | |||||||| |||| ||||| || || | |||||||| || || | Sbjct 5276 GTCTTTATAGGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTT 5335 Query 162718 CCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACG 162777 | ||| ||||| | | ||||| | || ||||| || | ||||| || || || || Sbjct 5336 CTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACA 5395 Query 162778 ACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACG 162837 || ||||||| | ||| | ||||||||| || ||||| || ||||||||| | || Sbjct 5396 ACACTCTCCAGCTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATCCCCTTAACA 5455 Query 162838 GCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 | ||| | || | || || | || | || | ||| | |||||| | ||||||| Sbjct 5456 G-CAGCAAAAAAAGATTCTGG--AGACTTTTTGTCAATGTGAATGCAGTAAAAATTCTGA 5512 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 ||||| ||||| | || || | ||| || | |||||| || || || | ||||| || Sbjct 5513 GGGGCATAGATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATT 5572 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 ||||| || | || || || || || || |||||||| Sbjct 5573 GAATAAGCAACTGGAAATTCCGCTTCTTCATCACTGAGAG 5612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578036294668800