Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6505 100 2e-16 seq12710 87.8 1e-12 >seq6505 Length=959 Score = 100 bits (110), Expect = 2e-16 Identities = 172/245 (70%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||||| || | ||| | || || ||| || || || ||| Sbjct 506 AAAATCTGCATGCCACCTCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATG 447 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| || || ||||| | || |||| || || |||||||| |||| | |||| Sbjct 446 TTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGC 387 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||||| ||||| || || ||| |||| || | |||||| Sbjct 386 TGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC-ACATTCTCAATGGTGTC 328 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||| ||||| || || || || | || || |||||||||||||| Sbjct 327 ACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 268 Query 33750 AGTTG 33754 |||| Sbjct 267 -GTTG 264 >seq12710 Length=3026 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||||||| ||||| | || |||| || || |||||||| Sbjct 2501 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAG 2560 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | |||||| || | || | ||||| ||||| || || || | ||| Sbjct 2561 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CATT 2619 Query 33679 GTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| |||||| || | ||||| |||| ||||| || || || || | || || || Sbjct 2620 CTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 2679 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 2680 AAAGATCTGCAT 2691 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || ||||| ||||| | || |||| || Sbjct 2717 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGC 2776 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || ||||| |||| | |||||| || | || | ||||| ||||| || || Sbjct 2777 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 2836 Query 33667 TGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | ||| ||| |||||| || | ||||| |||| ||||| || || || || Sbjct 2837 GCCTTGA-CATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTCTTGCCCGT 2895 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 2896 CAGGGTCTTCACAAAGATCTGCAT 2919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328484755253760