Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2070 188 1e-41 seq23427 172 8e-37 seq13340 167 3e-35 seq39856 147 3e-29 seq6279 140 5e-27 seq38854 132 7e-25 >seq2070 Length=1594 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 506 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 559 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||| ||| Sbjct 560 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 619 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||||| |||||||| Sbjct 620 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 679 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 680 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 728 >seq23427 Length=8199 Score = 172 bits (190), Expect = 8e-37 Identities = 175/227 (77%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| || | | ||| || |||| ||||| Sbjct 465 TACAAGGTGCTGAAGCAGGTCCACCCCGACACGGGT-----ATC-TCGTCCAAGGCCATG 518 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | |||||| ||| Sbjct 519 GGCATCATGAACTCGTTCGTCAACGACATTTTTGAGCGCATCGCCGGCGAGGCGTCGCGC 578 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||||| |||||||| Sbjct 579 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 638 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || | ||| |||||| ||||||| ||||||||| ||||||||||| Sbjct 639 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 685 >seq13340 Length=5718 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||| | ||||||||||||||| || | |||| || |||| ||||| Sbjct 4581 TACAAGGTGTTGAAGCAGGTGCACCCCGACACAGG-----CATC-TCTTCCAAGGCCATG 4634 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||||||| |||||||| || |||| ||||| | | |||||| ||| Sbjct 4635 GGGATCATGAACTCGTTCGTCAACGATATCTTCGAGCGCATTGCCGGCGAGGCGTCGCGC 4694 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| |||||||| || |||||||| Sbjct 4695 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAAACGGCCGTGCGG 4754 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| |||||| ||||||| ||||||||| || |||||||||| Sbjct 4755 CTCCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 4803 >seq39856 Length=34685 Score = 147 bits (162), Expect = 3e-29 Identities = 173/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| ||||| || |||||| || ||| |||| ||| |||| ||| Sbjct 812 TCTACAAGGTGCTGAAGCAAGTCCACCCCGACAC---TGG--CATC-TCCTCCAAGGCCA 865 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| | || ||||||| || ||| | Sbjct 866 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCTGGAGAAGCCTCCC 925 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| ||| ||| | | || ||||||||||| ||||||| Sbjct 926 GCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACGGCCGTGC 985 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | | | || || ||||||| |||||| ||||| ||||| |||| Sbjct 986 GCCTGCTGCTCCCAGGAGAGCTGGCCAAGCACGCTGTCTCGGAGGGTACCA 1036 >seq6279 Length=1238 Score = 140 bits (154), Expect = 5e-27 Identities = 154/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || ||| || |||| ||||| Sbjct 208 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATT-TCGTCCAAGGCCATG 261 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| | || ||||||| | |||||| ||| Sbjct 262 GGCATCATGAACTCGTTCGTCAACGACATTTTTGAGCGCATCGCCGGCGAGGCGTCGCGC 321 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| || ||| | |||| ||||||||||| |||||||| Sbjct 322 CTGGCGCACTACAACAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 381 Query 725094 CTGATCATGCGCGGCGAACTGGCC 725117 || | ||| |||||| || ||| Sbjct 382 CTCCTGCTGCCCGGCGAGCTCGCC 405 >seq38854 Length=6444 Score = 132 bits (146), Expect = 7e-25 Identities = 123/155 (79%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 724989 TTTGT-CAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047 ||||| ||||| ||| ||| |||||||| | |||||| |||||||||| || ||| Sbjct 841 TTTGTGCAACGCCATCTTCGGCCGCATCGCCGGCGAGGCGTCGCGCCTGGCGCACTACAA 782 Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 ||||||| || ||| | |||| ||||||||||| |||||||| || | ||| ||| Sbjct 781 CAAGCGCTCGACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGGCTCCTGCTGCCCGG 722 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||||||| ||||||||| ||||||||||||| Sbjct 721 CGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172532583809936