Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq40451 114 1e-20 seq2497 109 4e-19 seq29519 91.5 1e-13 >seq40451 Length=5959 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||| Sbjct 864 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 923 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 924 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 971 >seq2497 Length=80144 Score = 109 bits (120), Expect = 4e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||||||| Sbjct 74397 TGATGGCCTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTGAATGGTGAACTGT 74338 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 74337 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 74278 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACC 41204 | ||| | |||||||| || |||||||| || || ||| Sbjct 74277 GCTATTCACTGCTCACATACATGATTGCCCATGTCACC 74240 >seq29519 Length=205329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| |||||||| ||||| ||||||| ||||||||||| ||||| | Sbjct 15032 AAAATCCTTTTGATTTCATGGAAAACATTTCTCTGGAAGGAAAAACAAACTTCTTTGAGA 15091 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||||||||| || | | || ||| ||||| |||||| || | Sbjct 15092 AGCGAGTTTCAGAATATCAACGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 15151 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 15152 CTCTGGATGCAGATTT 15167 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || || || ||| | |||||||| || ||||| ||||| ||||||||| ||| || || Sbjct 6686 CAGGAGGTGCAAATCCCAGAAGCTCGTTGTTTCTATGGCTTTCAAATTCTCATTGAGAAC 6745 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||| || || |||||||| | || ||||| || |||||||||||| Sbjct 6746 GTTCACTCAGAGATGTACAGCTTGCTCATAGACACCTACATCAAAGAT 6793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397190897841640