Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq32774 167 7e-36 seq12710 140 1e-27 seq6505 113 1e-19 seq24399 100 9e-16 seq41555 95.1 4e-14 >seq32774 Length=46240 Score = 167 bits (184), Expect = 7e-36 Identities = 713/1114 (64%), Gaps = 16/1114 (1%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| |||||||| || ||| | || | || | ||||| || || Sbjct 417 AAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAAAACGCTGTAATCACG 476 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || || || ||||||| || || ||||||||||| | ||| | Sbjct 477 GTGCCCGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGAACCATCACT 536 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || | | || || ||||| ||||| || || || || || ||||| | Sbjct 537 GGCCTTAACGTGATGCGTATTATCAATGAGCCCACGGCAGCTGCTATAGCCTATGGCTTG 596 Query 349742 GATAA-AATG-----AGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || | | | | ||| || || | || || ||||| || || || || Sbjct 597 GACAAGAAAGGTACCCGGGCCGGAGAGAAGAACGTGCTCATCTTTGACTTGGGAGGGGGC 656 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||| ||||| || | || || |||| || || || ||||| || || | || ||| Sbjct 657 ACTTTCGATGTGTCCATCCTCACCATTGAGGATGGCATCTTTGAGGTGAAGTCCACAGCT 716 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || || |||||||| || ||||| || || | || || ||||| || Sbjct 717 GGTGACACCCACCTGGGTGGAGAGGACTTTGACAACCGCATGGTCAACCACTTTGTGGAA 776 Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCT 349974 ||||| |||||| |||| || || |||| | || |||| || | || || Sbjct 777 GAATTCAAGCGT-AAGCACAAGCGCGACATTGCTGGCAACAAGCGAGCGGTGAGGCGACT 835 Query 349975 AAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGA 350034 | || || ||||| | || ||||| || | ||| | || ||| | ||||| Sbjct 836 GCGCACGGCTTGTGAGAGGGCGAAGCGCACCCTCAGCTCTTCCACGCAAGCTAGCATTGA 895 Query 350035 AATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGA 350094 ||||| || || || |||| || |||| | || ||||| ||||| || || || Sbjct 896 GATTGACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCGCTTCGA 955 Query 350095 AGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGA 350154 || | | ||||| || | | || |||| || ||||| || | | || Sbjct 956 GGAGCTCAATGCTGATCTCTTCCGCGGCACCCTGGAGCCAGTGGAGAAGGCTCTGCGCGA 1015 Query 350155 TGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTAT 350214 ||| || | |||| ||||| | || | || | || ||||| || || ||||| Sbjct 1016 TGCCAAGCTAGACAAAGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCCACTCGTAT 1075 Query 350215 TCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAA 350273 || || | ||| || | ||| || || || ||||||||||| | | | ||| | | Sbjct 1076 CCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGAGC-A 1134 Query 350274 TTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCTGGAA 350333 | ||||| || || |||||||| || || ||||| || || ||| |||| | ||| Sbjct 1135 TCAATCCCGACGAGGCTGTTGCTTACGGCGCTGCCGTGCAAGCAGCTATCCTCATGGGAG 1194 Query 350334 ATAAGAGTTCTAAAAT-TG-ATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 | | ||| | ||| || | ||||| | || | ||||| || || || || || || Sbjct 1195 ACA--AGTCAGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCCTGGG 1252 Query 350392 ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTAC 350451 | || || |||||| ||| ||||||| ||| || | || | || | || || Sbjct 1253 TATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGGAACACCACCATCCCCAC 1312 Query 350452 AAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAG-CCAGCGGTAACAATTCAAG 350510 ||| | | || || || | || | |||| || ||| |||| || | || | Sbjct 1313 CAAACAAACTCAGACCTTCACCACTTACTCAGACAACCAGAGCAGC-GTCTTGGTCCAGG 1371 Query 350511 TATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAA 350570 ||| |||||||| | ||| || || || || || || || ||||| ||||| Sbjct 1372 TATACGAAGGTGAGAGGGCTATGACGAAGGACAACAACTTGCTGGGCAAATTTGACCTAA 1431 Query 350571 GTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATT 350630 | || || || || | ||||| || ||||| || ||| |||| || |||||| Sbjct 1432 CAGGCATCCCGCCGGCACCCCGTGGAGTCCCCCAGATCGAGGTCACTTTTGACATTGATG 1491 Query 350631 CAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 | || ||||| | ||||| | ||| || || || Sbjct 1492 CCAACGGTATCCTGAATGTCAGCGCTGTGGACAA 1525 >seq12710 Length=3026 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || ||||| || || || || || ||||| | || ||||||||| Sbjct 2708 AGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 2767 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| ||||| ||||| ||||| || ||| Sbjct 2768 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2827 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || ||||| || | ||| Sbjct 2828 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTC 2887 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 2888 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2919 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || || || || || || || || || || | || ||||||||| Sbjct 2480 AGGACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGCCCATCT 2539 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || | ||||| ||||| ||||| ||||| || ||| Sbjct 2540 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 2599 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || ||||| || | ||| Sbjct 2600 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAGGGTGATGGTC 2659 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 2660 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2691 >seq6505 Length=959 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || || || || || || || || || || | || || |||||| Sbjct 707 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 648 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || | ||||| ||||||||||| || || || ||| Sbjct 647 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCCTCCTTGTCC 588 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || ||||| || | ||| Sbjct 587 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTC 528 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || ||||||||||| Sbjct 527 TTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 496 >seq24399 Length=19255 Score = 100 bits (110), Expect = 9e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | ||||||||| | || || |||||||| || |||| ||| | ||| ||| Sbjct 19123 GCTGTCGGAATCGATCTCGGCACCACTTATTCCTGCGTTGGTGTGTTCCAACATGGGAAG 19064 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| || || || || || |||||| | || |||||| |||||||| || || Sbjct 19063 GTGGAAATCATCGCCAACGACCAGGGTAACCGGACCACGCCAAGCTACGTTGCCTTCACG 19004 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||| | ||||||||||| | || || || |||| ||| || |||| || Sbjct 19003 GATACCGAGAGGTTGATTGGTGATGCCGCGAAGAACCAAGTTGCGATGAACCCAACCAAC 18944 Query 349379 ACGGTTTTTG 349388 || ||||||| Sbjct 18943 ACAGTTTTTG 18934 Score = 96.9 bits (106), Expect = 1e-14 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| | ||||| | ||||| ||||||||||| ||||| | ||||| || Sbjct 18120 ACTGTTACTAACGCTGTGGTGACTGTGCCAGCCTATTTCAATGACTCTCAGCGCCAGGCT 18061 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| || | || || || |||| || ||||| || || Sbjct 18060 ACAAAAGATGCTGGAACCATTGCAGGCCTCAACGTGCTGCGAATTATCAATGAGCCAACA 18001 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || ||||| || || |||| Sbjct 18000 GCTGCTGCCATAGCCTATGGTCTGGACAAAA 17970 >seq41555 Length=5990 Score = 95.1 bits (104), Expect = 4e-14 Identities = 126/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| | || || | ||| | | |||| || || || | Sbjct 1174 ACAGCTGCTGCCATTGCTTATGGATTGGACAAGA-GAGAGGGCGAGAAGAACATCCTCGT 1232 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 ||| || || ||||| || ||||||||||| || || || ||| |||| | ||| | Sbjct 1233 GTTT--GACTTGGGTGGCGGAACTTTTGATGTCTCCCTTCTCACAATTGACAACGGAGTC 1290 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || || |||||| || ||||| ||||||||||| ||||| Sbjct 1291 TTTGAAGTTGTGGCTACGAATGGTGACACTCATCTGGGTGGAGAAGACTTTGA 1343 Score = 84.2 bits (92), Expect = 7e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 |||||| ||||||| || ||||| || |||||||| |||||| || || ||||||||| Sbjct 981 GCTGTTGTTACTGTGCCGGCCTACTTCAATGATGCTCAGCGTCAGGCCACGAAAGATGCT 1040 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 || | ||||| ||| | || || | ||||| |||||||| || Sbjct 1041 GGTACTATTGCTGGGCTGAACGTGATGAGAATTATTAATGAGCC 1084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514191899826584