Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq31934 131 2e-25 seq22548 86.0 8e-12 >seq31934 Length=33687 Score = 131 bits (144), Expect = 2e-25 Identities = 255/370 (69%), Gaps = 20/370 (5%) Strand=Plus/Plus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 || ||||| |||||| ||| || || |||||| |||||| |||||||| ||| Sbjct 17134 TTCCCCATTGCCTACGTGAT---GACCCTGCACAAGGAGTTCGAGACCTTCGAGCGGCTC 17190 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC--CG 13809 | ||||| | ||| || || ||| ||||||||||||||||||| ||||| | || Sbjct 17191 TTCAGGGCAGTGTACATGCCCCAAAACATCTACTGCGTCCACGTGGATGCCAAGGCGCCG 17250 Query 13810 GCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG-TGCTTCCCTAACGTGGCCCTG 13868 || | | |||| | ||| ||||| | || || |||||||| |||| ||| Sbjct 17251 GCCTCCT-TCCATC--GAGCGGTTCGGCGACTGCTGGGCTGCTTCCCCAACGCCTTCCTC 17307 Query 13869 GCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC----GCGTGCAGGCCGACCT 13924 ||| ||| | | ||||| || || ||| | | || ||| ||| ||||| Sbjct 17308 GCCTTGCGGGCGGAGCGGGTGGTCTATGG----TGGGGCCTCCCGCCTGCGGGCTGACCT 17363 Query 13925 CAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTG 13984 | ||||||| |||| || ||||| | || ||| | |||||||||||| || Sbjct 17364 CCACTGCATGAGGGACTTGCTGGCCTCGGCTGTGCCCTGGCGCTACCTGCTCAACACCTG 17423 Query 13985 CGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGG 14044 ||| ||||||||| | |||||||||| ||||||||||||| ||||||| ||| || Sbjct 17424 CGGCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTGCGGCTGCTGAAGAGCCTCGG 17483 Query 14045 CGGCAAGAAC 14054 || |||||| Sbjct 17484 TGGGAAGAAC 17493 >seq22548 Length=9234 Score = 86.0 bits (94), Expect = 8e-12 Identities = 183/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| |||||||| || ||| |||||||||| || | |||||||| | | | ||| Sbjct 5010 GACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAATCC-CTGAAGTCCC 4952 Query 14337 GGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTT 14395 || | | || | | || ||||||||||| || |||||| || || ||| || Sbjct 4951 AGGTGCAGTTCCTTCTAGCGACAAGTACGACATTTCCGACATGAATGCGCTGGCCAGATT 4892 Query 14396 CGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGA 14455 |||||||||||| |||| || || || | ||||| || | ||||| || ||| Sbjct 4891 CGTCAAGTGGCAGTACTTTGAAGGTGACGTGTCCAAAGGTGCACCCTACCCACCATGCAG 4832 Query 14456 CGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGAG 14515 ||| || ||||| | | | | || | || ||| | || ||| |||| ||| | | | Sbjct 4831 CGGAATTCACGTTCGCTCTGTTTGTGTTTTTGGGGCAGGAGACCTGAACTGGATCCTGCG 4772 Query 14516 CGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || ||| | ||||| || ||||| ||| Sbjct 4771 AAACCACCACTTCTTCGCTAATAAGTTTGAC 4741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658288556513280