Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2497 122 7e-23 seq38721 87.8 1e-12 >seq2497 Length=80144 Score = 122 bits (134), Expect = 7e-23 Identities = 130/169 (77%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| ||||||||||||||||| || || || ||||||| || Sbjct 77330 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 77389 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 || ||||| || ||||| ||| ||| ||| |||| ||| || | || || || || | Sbjct 77390 CCCTTCTTCTCTGGTGCT-GAAACCCTGCTTATCCAGAAACTCACGTGATCCATTAGCAT 77448 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||| ||||| || || || ||||||||||||||| ||||| || || Sbjct 77449 CCCAAATCTTCACGCCTTTTGCAGAGAGCTCTTTGGCATTTGTCGAACC 77497 Score = 109 bits (120), Expect = 4e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 |||||||||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 74234 TAGCCCGGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 74293 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || || || ||||| || || |||||||| ||||| || || || || || || | Sbjct 74294 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAGTTCACCATTCAG 74353 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| | ||||| || Sbjct 74354 AACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAGGCCATCAG 74398 >seq38721 Length=31838 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || ||||| || |||| || || |||||| ||| ||| | |||||| || || Sbjct 2343 TTGAGTTCTCTGCTAAGCACTATATTAATTCTGTCTTTCAAAGGACGATTCTTCTCAGGA 2284 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||||| ||||||| || ||| Sbjct 2283 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCGTTCTGTTTACCT 2236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406039391978976