Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2497 82.4 7e-11 >seq2497 Length=80144 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| || ||||||||||| || || || || ||||| || || || || Sbjct 77340 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCTTCTTCT 77399 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| |||||||| || || || || | ||| ||||| |||||| Sbjct 77400 CTGGTGCTGAAACCCTGCTTATCCAGAAACTCACGTGATCCATTAGCATCCCAAATCTTC 77459 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 77460 ACGCCTTTTGCAGAGAGCTCTTTGG 77484 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | || || || || |||| Sbjct 77484 CCAAAGAGCTCTCTGCAAAAGGCGTGAAGATTTGGGATGCTAATGGATCACGTGAGTTTC 77425 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | || || || || ||||| || || || || |||| Sbjct 77424 TGGATAAGCAGGGTTTCAGCACCAGAGAAGAAGGGGATTTGGGACCAGTTTATGGTTTCC 77365 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || ||||| || || || Sbjct 77364 AGTGGAGGCATTTTGGAGCAGAATA 77340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447955743692160