Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12710 89.7 3e-13 seq6505 86.0 4e-12 >seq12710 Length=3026 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || ||||| || || || || | | Sbjct 2691 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGCCTAGT 2632 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || || || || Sbjct 2631 GACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCTGACCA 2573 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||| | |||||| | ||| ||||| Sbjct 2572 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGGCGCACTCTCTCCGACTACAA 2513 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 2512 CATCCAGAAGGAATCCAC 2495 >seq6505 Length=959 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| || || || || ||||| || || || || || Sbjct 265 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCCC 324 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | ||||| ||||| | || || || Sbjct 325 AGTGACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCTGA 383 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||||||||| || |||||||| | ||||| | ||||| Sbjct 384 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGATTA 443 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || || ||||| Sbjct 444 CAACATCCAGAAGGAATCCAC 464 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || ||||| || || || || ||| Sbjct 496 ATGCAGATTTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTAGAGCCCAGT 555 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || || || || Sbjct 556 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGGATTCCTCCTGACCA 614 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || |||||||| | ||||| | ||| ||||| Sbjct 615 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 674 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 675 CATCCAGAAGGAATCCAC 692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337784148441824