Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq40451 113 4e-20 seq29519 100 2e-16 >seq40451 Length=5959 Score = 113 bits (124), Expect = 4e-20 Identities = 106/134 (79%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| |||||||||| || ||||| |||||||| || | ||| ||||||| || Sbjct 3041 ATTCATACCT-CGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCC 2983 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || | ||| || || | ||||| || ||||||||||| || |||||||| || Sbjct 2982 TCTTTTCTTCAACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGC 2923 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 2922 TGCAAAAGCTACTA 2909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || || |||||||| |||||||||||||| || ||| Sbjct 970 TCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCA 911 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | ||||||||| | ||| ||||| Sbjct 910 ATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 867 >seq29519 Length=205329 Score = 100 bits (110), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || | |||||| ||||| || || ||||||||||||||||| |||| || Sbjct 5705 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 5646 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||||| ||||| || | ||| || | || | ||| |||||||| || | || || | Sbjct 5645 CATGAGAGATAAAATATTTTTCATCTGCTTTCAATTTGTTCCAGTGAGGAAGGTCCTTTG 5586 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 5585 ACAAATCAAC 5576 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||||||||| || || || || | ||| ||||| | || ||||| || Sbjct 9306 TCATCTCTGCTAATCAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 9247 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||||||||| || ||||| || || |||||||| || ||||| || || || || || Sbjct 9246 AGCCAAAATATGGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCGACTGCAGCGAAGGCA 9187 Query 4692 AC 4693 || Sbjct 9186 AC 9185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426764758984424