Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2497 113 3e-20 >seq2497 Length=80144 Score = 113 bits (124), Expect = 3e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 |||||||||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 74234 TAGCCCGGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 74293 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || ||||| || || |||||||| ||||| || || || || || |||| Sbjct 74294 CACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAGTTCACCATTCAG 74353 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||| ||||| | ||||| || Sbjct 74354 AACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAGGCCATCAG 74398 Score = 113 bits (124), Expect = 3e-20 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || || || ||||||| || Sbjct 77330 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 77389 Query 27549 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 || ||||| || ||||| ||| ||| ||| |||| ||| || | || || || || | Sbjct 77390 CCCTTCTTCTCTGGTGCT-GAAACCCTGCTTATCCAGAAACTCACGTGATCCATTAGCAT 77448 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||| ||||| || || || | ||||||||||||| ||||| || || Sbjct 77449 CCCAAATCTTCACGCCTTTTGCAGAGAGCTCTTTGGCATTTGTCGAACC 77497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369260739621368