Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq40850 98.7 1e-15 seq40451 95.1 2e-14 >seq40850 Length=60012 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||| ||||| ||||||||||| ||||| || |||| || || |||| || || || Sbjct 51687 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 51746 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 |||||| || || || ||||| |||||| ||||||||||| | || || | ||||| | Sbjct 51747 TTCTTCTTTCCCAGTGTTCTTCTTTAAG-TCGAGAAACTCAAAGATGTCCAAGTGCCACG 51805 Query 78121 GTTCTAGATATATTGCCATAACTCCAGG 78148 | || || || || || | | | ||||| Sbjct 51806 GCTCCAGGTAGATGGCAAAAGCCCCAGG 51833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 || || | |||||||||||| ||||||| | || ||||||||||| || |||||||| Sbjct 48047 GAACCCTCATATGTTTCATACGGTCCTTGCTTCTCGGCTAGTTCACAGCTGGCTTCCAAA 48106 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 || ||||||||||| || || ||||| | || || | || || || ||| ||| Sbjct 48107 GCACCGTAATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGCTGGGCCTCGGGACTTTCA 48166 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 || ||||| | | || || ||||| || | ||||| || || || ||||| || Sbjct 48167 AAGGGATACCTCATCAAGATGAAAGCATCGGCCAGGCCCTGCACACCGATGCCAATGGGA 48226 Query 77535 CTATGTCTCTTATTGGA 77551 | ||| | | | ||||| Sbjct 48227 CGATGGCGCCTGTTGGA 48243 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 43783 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATGTGGATGT 43842 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || || |||||||||||||| || || ||||| || | ||||| | Sbjct 43843 TGAGGGACTGGCTCTGGTCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 43902 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || ||| ||| || | ||||| |||| Sbjct 43903 TCTGGGAGATCTCCCACACTGTCTTATAAAGTTGCTTCAAGTCATCAGGAA 43953 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || || ||||| || || || | ||| Sbjct 45713 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCAATGGAT 45772 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || ||||| ||||| || ||||||||||||||||||||||| || Sbjct 45773 TCGTTGTTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 45816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || |||||||| || | || || || || || |||||||| | ||||| || |||||| Sbjct 54117 GTGCCTGCATTGAACAGCGTGGGGGAGGCGTGAGTAAACCACCTCTCAGACAGGAGATTG 54176 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||| || || | || ||||| || || || || |||| || | ||||||| Sbjct 54177 TAAGTTTCGATTGCAGCATCAATGTCGTTTTTGTGGATCCCCACCGACACCCTCATCAAC 54236 Query 78519 ATATGCTGAGGTCTTTCA 78536 ||||||||||| | |||| Sbjct 54237 ATATGCTGAGGACGTTCA 54254 >seq40451 Length=5959 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 4498 GACATCACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4439 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || ||||||||||| || ||||| ||||| Sbjct 4438 TCCAGAGAGATATTTTCCATGAAGTCAAAAGGATT 4404 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || ||||| || || | ||| |||||||| ||||| || |||||||| || | ||| || Sbjct 3032 TCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCTTC 2973 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | ||| || || | || ||||| ||||||||||| || |||||||| || ||||| || Sbjct 2972 AACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAGC 2914 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| ||| || || || | |||||| |||||||| || || |||||||| || || Sbjct 971 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 912 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||||||||| ||||| || Sbjct 911 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694193577073920