Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq29519 102 1e-16 seq40451 95.1 2e-14 seq40850 93.3 6e-14 >seq29519 Length=205329 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 9306 TCATCTCTGCTAATCAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 9247 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||||||||| || || || || || |||||||| || ||||| || || ||||| || Sbjct 9246 AGCCAAAATATGGCAGCAAAGGAACCCGAAAAGAAGATTCCTTCGACTGCAGCGAAGGCA 9187 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 9186 ACCACTCTCTCACC 9173 >seq40451 Length=5959 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383 ||||| |||||||| | || ||||||||||| || ||||| || ||||| || |||||| Sbjct 4498 GACATCACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4439 Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||| || ||||||||||| || ||||| ||||| Sbjct 4438 TCCAGAGAGATATTTTCCATGAAGTCAAAAGGATT 4404 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 || ||||| || || | ||| |||||||| ||||| || |||||||| || | || || Sbjct 3032 TCGTCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCCGGCATTAGCCCTCTTTTCTTC 2973 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || || | || ||||| ||||||||||| || |||||||| || || || || Sbjct 2972 AACCAGAAAATGGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCTACTGCTGCAAAAGCT 2913 Query 46774 AC 46775 || Sbjct 2912 AC 2911 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | |||||| |||||||||||||| || ||||| || || Sbjct 971 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 912 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || || || ||||| | ||||| || || ||||| ||| Sbjct 911 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 866 >seq40850 Length=60012 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 43783 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATGTGGATGT 43842 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || || |||||||||||||| || || ||||| || | ||||| | Sbjct 43843 TGAGGGACTGGCTCTGGTCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 43902 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | || ||||| | || || ||| ||| || | ||||| |||| Sbjct 43903 TCTGGGAGATCTCCCACACTGTCTTATAAAGTTGCTTCAAGTCATCAGGAA 43953 Score = 93.3 bits (102), Expect = 6e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| ||||| || || || | ||||||||| || | || | ||| || |||||||| Sbjct 48031 TCCTTTGCTGACAGGAGAACCCTCATATGTTTCATACGGTCCTTGCTTCTCGGCTAGTTC 48090 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGATCTT 76052 || || || || || |||||||||||||| || || ||||| | || || ||| | | Sbjct 48091 ACAGCTGGCTTCCAAAGCACCGTAATAAATGGTCTCAAAAATTTGCTGGTTCAAGCGC-T 48149 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 | || || |||| ||||| ||||| | | || || ||||| || || ||||| | Sbjct 48150 GGGCCTCGGGACTTTCAAAGGGATACCTCATCAAGATGAAAGCATCGGCCAGGCCCTGCA 48209 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 | || || ||||| || | ||| | | | ||||| |||||| Sbjct 48210 CACCGATGCCAATGGGACGATGGCGCCTGTTGGAGCGTTCAGC 48252 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| |||| || || || || ||||| ||||| | ||||| || |||||| Sbjct 54117 GTGCCTGCATTGAACAGCGTGGGGGAGGCGTGAGTAAACCACCTCTCAGACAGGAGATTG 54176 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| || | || || || || || || || || || | || | ||||||| Sbjct 54177 TAAGTTTCGATTGCAGCATCAATGTCGTTTTTGTGGATCCCCACCGACACCCTCATCAAC 54236 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||||||||| ||||| Sbjct 54237 ATATGCTGAGGACGTTC 54253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712446681576960