Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq2497 82.4 3e-11 >seq2497 Length=80144 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| ||| |||| |||||| | || | ||| |||||||| ||||| ||| | || || Sbjct 74395 ATGGCCTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTT-CTGAATGGTGAACTGTC 74337 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | |||||| |||||| || ||| | || || || || || |||||||| Sbjct 74336 TTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCAG 74277 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||||| |||| || | ||||||| Sbjct 74276 CTATTCACTGCTCACATACATGATTGC 74250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189972457560080