Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq12710 143 6e-29 seq6505 111 4e-19 >seq12710 Length=3026 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||||| || || || || || || ||||||||||| |||| | ||| Sbjct 2470 CCTGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGAGT 2529 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || || ||||| ||||| |||||||||||||| | | || || Sbjct 2530 GCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 2589 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || |||||| |||| | | |||| | ||| || ||||| Sbjct 2590 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAG 2649 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| || |||||||| |||| |||||| Sbjct 2650 GGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2691 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||||| || || || ||||| || ||||||||||| || | | || Sbjct 2698 CCTGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 2757 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || || || || ||||| |||||||||||||| | | || || Sbjct 2758 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 2817 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || |||||| |||| | | |||| | ||| || ||||| Sbjct 2818 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACCTCAAG 2877 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| || |||||||| |||| |||||| Sbjct 2878 GGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 2919 >seq6505 Length=959 Score = 111 bits (122), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || || || |||||||||||||| | | || | |||||| Sbjct 479 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCT 420 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || |||||||| || Sbjct 419 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 360 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || ||||| || || Sbjct 359 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATG 303 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| |||||| || Sbjct 302 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 265 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || || || || ||||||||||| |||| | || | |||||| Sbjct 707 AGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 648 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| |||||||||||||| | | || || ||||| || Sbjct 647 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATCCCCTCCTTGTCC 588 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| |||||| ||||| || || Sbjct 587 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCTACCTCAAGGGTGATG 531 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | ||||| ||||| | |||||| Sbjct 530 GTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153011737970488