Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq6505 145 5e-30 seq12710 132 3e-26 >seq6505 Length=959 Score = 145 bits (160), Expect = 5e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||||||| | || ||| ||||| || ||| ||||| |||||||||||||| Sbjct 498 CATGCCACCTCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAATC 439 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| ||||||||||||| | |||||| || | Sbjct 438 AGACAGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGG 379 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||||| | | |||||||| || || Sbjct 378 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 319 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||||| | || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 318 CACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 264 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| ||||| || ||| ||||| ||||||||||| |||| Sbjct 722 CCACCCCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 663 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||||||||||| | |||||| || | ||| Sbjct 662 AGGGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 603 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||||| | | |||||||| || || ||| Sbjct 602 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCTACC 543 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || | |||||| ||||| || |||||| Sbjct 542 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAAATCTGCATG 495 >seq12710 Length=3026 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || || || | || || ||||| || ||| ||||| ||||||||||| |||| | Sbjct 2465 CCACCCCTGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 2524 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| ||||||||||||| | |||||| || | || Sbjct 2525 AGAGTGCGCCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 2584 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||| | | | |||||||| | |||||| Sbjct 2585 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCCACC 2644 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| ||||| ||||||||||| ||||| |||||| Sbjct 2645 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 2692 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || || ||||| || ||| |||||| ||||||||||| || Sbjct 2689 CATGCCACCCCTGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 2748 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| |||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 2749 AGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG 2808 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| ||| ||||| ||| | | | |||||||| | || Sbjct 2809 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTC 2868 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||| | || || ||||| ||||| ||||||||||| ||||| |||||| Sbjct 2869 CACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 2920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359750287303176