Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apaloderma_20vittatum_20[refseq_20GCF_5F000703405.1_202014-06-16] 54,728 sequences; 1,070,836,417 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq37580 158 2e-33 >seq37580 Length=111331 Score = 158 bits (174), Expect = 2e-33 Identities = 213/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | || ||||| || || |||||| | |||| || ||| | | ||| Sbjct 4857 GGAACGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGCAAGGAGGCGG 4798 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || |||| ||||| | || ||||||||||| |||||||||||| | || | Sbjct 4797 TATTGATTATTTCGAAGCCCACTTTCCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGAG 4738 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || ||||| || || |||| ||| | || Sbjct 4737 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAAGGGCGCTCCCATCTCCACCATCG 4678 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || ||||||||||| || || |||||||| || | | || | ||||||||||| Sbjct 4677 TTTCGCCGAAGATGGCACCTGGTCGTGGCTTTTCTACGAGAAGGCCCGGGTACAGCTCCA 4618 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| || | |||||| ||||| | ||||| || || || || |||||||||| Sbjct 4617 TAGCGTCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTG 4561 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 |||||||| || || ||||| || ||||| ||| ||| || ||||| || ||||||| Sbjct 2831 ATGAGTCGGGTAGTTTGGAAGAGCTGCTCATCATCCCACTCGGGATGCTCCCGTTTCAGG 2772 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 ||||| || || | |||||||||||| ||||| || || || |||||||| | || || Sbjct 2771 ACATCACAGACACGGTTGTGTTCCCTCAGCCATATGGTAGCATACATCATCAAGCCTGGG 2712 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || ||||||| | ||| || ||| || | | ||||| Sbjct 2711 ACCAACCCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 2652 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || ||||||||| Sbjct 2651 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 2592 Query 9484 TG 9485 || Sbjct 2591 TG 2590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716386384581120