Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2037 149 8e-31 seq560 131 2e-25 >seq2037 Length=14738694 Score = 149 bits (164), Expect = 8e-31 Identities = 198/275 (72%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||||||||||| | |||||||||||| Sbjct 14657222 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCA 14657281 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 14657282 GACCGGGGACCAGATGATGGACTGTGGGTTGGTCATCAGCGAGGAGGGGTCGTCGTGCGG 14657341 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| |||||| ||||||| |||||| || || || | ||||| ||||| Sbjct 14657342 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAAGAGAGGGTGCGCGTTCTTCCCGTTCACCTC 14657401 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||||||||| | || || || |||| | | ||||| || ||||| || | || ||| Sbjct 14657402 GCACTTCTCGAACATGATGAAATTGGGCTTGTACCCGTTGCCGGGACGAACATACTCCAG 14657461 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || ||| |||||| || || ||||||||||| Sbjct 14657462 CGAGAGCAGGATCTCCGCGCTCGTGGCGTTTTCCT 14657496 >seq560 Length=455653 Score = 131 bits (144), Expect = 2e-25 Identities = 224/312 (72%), Gaps = 16/312 (5%) Strand=Plus/Plus Query 83056 GAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGG-CA-GCGGTGGCTGTACCTG 83113 ||| ||| || |||||||||||||| || || ||| || |||| ||||||| | Sbjct 8288 GAGGAGGCGCTGGATGTCGGGCTCCA--GCTGGGCGGTGGGCATGCGGGGGCTGTAGCGC 8345 Query 83114 CGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTG 83173 || | || || || | |||||||| |||||||||||||||||||| | |||| | Sbjct 8346 CGGAAAGGTTCCCCCTCGGGACCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGGAG 8405 Query 83174 CGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTC 83232 || | ||| || |||| | || |||| ||| ||| || |||| | ||||| Sbjct 8406 CGCCGCACCGGGCTCCAGATGAGGAAGCGGGGCTCGGTCATCAGGTGTGC-CGCCTCGTC 8464 Query 83233 GCTAGGCGCCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCA 83287 | ||||| |||||| |||| || ||| ||||||||| || || || ||| || Sbjct 8465 GGCCGGCGCGGGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCT-GC- 8519 Query 83288 CCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGG 83347 ||||| |||| |||||||| |||||| | ||||| ||||||||||| ||| || || Sbjct 8520 CCGTTCACCTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCCCCCCCCGGCCGC 8579 Query 83348 ACGTGCTTCAGG 83359 |||||||||||| Sbjct 8580 ACGTGCTTCAGG 8591 Score = 118 bits (130), Expect = 1e-21 Identities = 121/156 (78%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 8717 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 8774 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | ||||||| ||| | ||| ||||| ||||| |||||| | ||||||||||||| Sbjct 8775 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGGGACG 8833 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 | |||||||||||||| | || |||||||| |||| Sbjct 8834 CCACGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 8869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608715586506880