Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq1814 98.7 2e-15 >seq1814 Length=2962848 Score = 98.7 bits (108), Expect = 2e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||| | ||||| ||||| |||||||||| ||||| || Sbjct 2890194 GCTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTACGGA 2890253 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | |||||||| || || ||||||||||| || | || || Sbjct 2890254 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATACTTAACCAT 2890312 Query 52176 AATGCAGTTGGTA 52188 | |||| ||||| Sbjct 2890313 ATTGCAACTGGTA 2890325 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 2890834 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 2890893 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| | |||||||| Sbjct 2890894 CCCTAAATGGATGCACTGGGGTGTGATTTTCTATGCTGTCACCTTCATTCTCCTGTTTGG 2890953 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 2890954 TAACTTCTACTATCGGACATATAAG 2890978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923073645546880