Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2314 435 2e-117 seq2067 86.0 4e-12 >seq2314 Length=277686 Score = 435 bits (482), Expect = 2e-117 Identities = 778/1124 (69%), Gaps = 20/1124 (2%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| || || ||||| || |||| | |||||| || | Sbjct 185082 ATCAACTGCTCGGGGGTCGTCCGCGGGGATGAGAAAGCCATCCAGGAGGCCCAGCTCAGC 185023 Query 107583 AACCTGGAAGT---GAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATA 107639 |||||||| || ||| |||||| || ||| || || | | | ||||| ||||| Sbjct 185022 AACCTGGAGGTTGCGAACAAAAAG--GTTGCC-CTGACGCCCGGCGAGTACCTGAACATG 184966 Query 107640 ACCAGAGACTGTGAGC-GCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAG 107695 || | ||||| ||| ||||||||| ||| || |||||| ||||||| ||||| Sbjct 184965 ACGAAGGACTGC-AGCAGCTTCAAGGAGACCC---GGCGGTTCATTGAGTTCCCGCTGAG 184910 Query 107696 TAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 | || ||| ||| |||||||| |||||||| ||||| |||| || || || || | Sbjct 184909 CCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAAATCGAGAT 184850 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 || || ||||| ||||| || | || ||||| |||||| | ||||| |||||| || Sbjct 184849 GTTCGAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACGTCTACTGCGTCCACACTGA 184790 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAA 107875 |||||||| | | ||| | ||||| || |||||| | ||||||||||||| Sbjct 184789 CAGCAAGTCCCCGGCCGCCTTCCAGGAGGCTGTGCGGGCCATCGTAGCCTGCTTCCCCAA 184730 Query 107876 TGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGC 107935 |||||| |||| || ||| |||||| ||||||||||||||| | |||| || Sbjct 184729 TGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGGCTGCAGGC 184670 Query 107936 TGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 ||||| ||||| ||| | ||| || | |||||| | | |||||| | ||| | || || Sbjct 184669 CGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATACCATGGCACTACATGCTCAA 184610 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGAT 108055 || ||||| || || |||||||| |||||||||||| |||| |||| ||||| ||||| Sbjct 184609 CACCTGCGGCACTGATTTCCCCATCAAGACCAATGCCCAGATTGTCCGTGCCCTGAAGAT 184550 Query 108056 GTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTG 108115 | || |||| |||||| |||||||| ||| || || | | || | | ||||| Sbjct 184549 GCTGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCTTGAAGCAGGAGCGCTG 184490 Query 108116 GAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGA-TGAAGGACCCTC 108174 | | |||| | | || ||| ||| | | ||| |||| | | ||| || | Sbjct 184489 GCAGTACCACCACGAAGTGGGGGACTTCATCT-CCCGGACAGCCACAGAGAAACTGCCGC 184431 Query 108175 CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTG 108234 | || | || | |||||||||||||| || || || | ||| | | || ||||| | Sbjct 184430 CACCCCACAACTCTCCCATGTTCACAGGCAACGCGTACATCGTGATCACGCGGGCCTTCG 184371 Query 108235 TCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCT 108294 | || || ||||| || ||||| | | || | | || |||| ||||||||||| Sbjct 184370 TGCAGCACGTCTTTGAGAACCCCACGGCGCAGCAGTTCCTCGAGTGGGCCAAAGACACCT 184311 Query 108295 ATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGTGGATGCCTGGCTC 108352 | ||||| ||||| || ||||||||||||| | || ||| | ||| |||| ||| | Sbjct 184310 ACAGCCCTGACGAGTACGTCTGGGCCACCCTCAACCGCATGCCCGGTG--TGCCGGGCGC 184253 Query 108353 TGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 | || | ||||| || |||| ||||||| ||| | || | || ||||| Sbjct 184252 CATGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCCTGCCCCGCCTGGTCAA 184193 Query 108413 GTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAAT 108472 ||||||||||| ||||| || ||||| ||| ||||| || | |||||| | || Sbjct 184192 GTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCA 184133 Query 108473 CCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCA 108532 || | | | | ||||||| ||||||| || || || |||||| |||||| | || Sbjct 184132 GCACCAGCGCAGCGTCTGCATCTACGGGGTGGGCGATTTGCCCTGGATGCTCCAGCAGCA 184073 Query 108533 TCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGA 108592 ||||||||||| |||||||| ||||| |||||| ||| || | | ||||| | || Sbjct 184072 CCACCTCTTGGCCAACAAGTTCGACCCCCTGGTGGACGATGCCGCCATCCAGTGTCTCGA 184013 Query 108593 AGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 ||| |||| || || | |||| |||| || | | ||| |||| Sbjct 184012 GGAGCACCTGCGCCACAGGGCCCTCTACGGCAGGGGACTCTGAG 183969 >seq2067 Length=6292079 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 3037528 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 3037469 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 3037468 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 3037409 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || | || || Sbjct 3037408 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 3037349 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 3037348 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGG 3037289 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 3037288 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 3037231 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | ||||| || ||||||||||| Sbjct 3037230 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 3037188 Score = 84.2 bits (92), Expect = 2e-11 Identities = 197/289 (68%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 3036939 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 3036880 Query 108334 CTCCGTGGATGCCTGGCT-CTGTT-CCTAGCCACCC-CAAGTATCACATCTCAGACATGA 108390 ||| || | || || | | ||| ||| ||| ||||||| | | || ||||||| Sbjct 3036879 -TCCCTGAAGTCCCGGGTGCAGTTTCCT--CCAGTGTCAAGTATGATGTTTCTGACATGA 3036823 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGA--GGGAGATGTCAGCATGGGGGC 108448 ||| | |||||| | ||||||||||||||| || | || ||||| || || || Sbjct 3036822 ATGCATTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATGTC--CAAAGGTGC 3036765 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 || || |||| ||| |||| | || | | |||| ||| || | || || Sbjct 3036764 ACCCTACCCACCATGCAGTGGAGTTCACGTTCGCTCTGTCTGTGTTTTTGGAGTAGGAGA 3036705 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 3036704 CCTAAACTGGATGCTACGAAACCACCACTTCTTTGCCAATAAGTTTGAC 3036656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348223502418528