Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1259 113 4e-20 seq1987 111 1e-19 >seq1259 Length=6625186 Score = 113 bits (124), Expect = 4e-20 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| ||||||||| ||||||||||| ||| ||| | || |||| Sbjct 1557587 CAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 1557528 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || |||||||| | Sbjct 1557527 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGGA 1557468 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | | ||| ||||| | ||| || ||||||| Sbjct 1557467 TCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTGC 1557408 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 | ||||| |||||||||||||| ||||||||| Sbjct 1557407 CAGTCAGGGTCTTCACAAAGATCTGCATGTTG 1557376 Score = 113 bits (124), Expect = 4e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| ||||||||| ||||||||||| ||| ||| |||| |||| Sbjct 1557815 CAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCA 1557756 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || || || || | || ||||||||| | Sbjct 1557755 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGA 1557696 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||| | ||| || ||||||| Sbjct 1557695 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 1557636 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | ||||| |||||||||||||| |||||| Sbjct 1557635 CAGTCAGGGTCTTCACAAAGATCTGCATG 1557607 >seq1987 Length=3461734 Score = 111 bits (122), Expect = 1e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||| ||| |||||||| |||||||||||| ||| ||| | || |||| Sbjct 3430342 CAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 3430401 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || || || || || |||| || ||| || ||||| || | || ||||||||| | Sbjct 3430402 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGA 3430461 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | | |||| | ||| ||||||| ||| || ||||||| Sbjct 3430462 TCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGC 3430521 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | |||| |||||||||||||| ||||| || Sbjct 3430522 CAGTCAAGGTCTTCACAAAGATCTGCATTTT 3430552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395023814544112