Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1814 172 1e-37 seq1987 140 7e-28 seq1250 113 1e-19 seq1145 111 4e-19 seq1757 89.7 1e-12 seq2342 84.2 5e-11 >seq1814 Length=2962848 Score = 172 bits (190), Expect = 1e-37 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||||||||| | ||||| | ||||||||| Sbjct 2887823 GCTTTATGGTGGTATTATGTCTCTAAAGGAATAGAATATTTGGATACAGTATTCTTCATC 2887882 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 2887883 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 2887942 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 2887943 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGCGGACAAG 2887985 >seq1987 Length=3461734 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| ||||| || || ||||| || || || | || ||| Sbjct 3430338 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 3430397 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || |||||||| ||||| || || || ||||| || ||| Sbjct 3430398 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 3430457 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| || || || || ||||| | || || ||| Sbjct 3430458 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTC 3430517 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| | || || ||||| ||||||||||| Sbjct 3430518 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 3430552 >seq1250 Length=5414156 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 2789516 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 2789575 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 2789576 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 2789635 Query 269258 GA 269259 || Sbjct 2789636 GA 2789637 >seq1145 Length=9930023 Score = 111 bits (122), Expect = 4e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| || || ||||| || |||||||| || |||||||| Sbjct 4079213 GGAGAACGCGTAGTAGCTTTTGCAGCAGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCA 4079154 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | || || ||||||||| | Sbjct 4079153 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACGTTTTCTAACGAACTC 4079094 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 4079093 ATCAGCAGAGATGA 4079080 >seq1757 Length=5559841 Score = 89.7 bits (98), Expect = 1e-12 Identities = 124/172 (72%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 238599 TCCGCCCAGATACAAATGGT--AAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATT 238656 ||| ||||| | |||||||| | ||| ||||| |||||| | ||| | || ||||| | Sbjct 4305738 TCCCCCCAGCTCCAAATGGTCCAGGAC--GGCAAGATGCATGGCTTCCTGCGGATGTACT 4305795 Query 238657 GGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATAGTATTT 238716 |||| || ||||| || || ||||| | || || ||||||| || | | | || | Sbjct 4305796 GGGCCAAGAAGATCCTGGAGTGGACCCGCTCCCCCGAGGAAGCCCTGCGGTTTGCCATCT 4305855 Query 238717 ATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGG 238768 | || ||||| ||||| || || || | ||| || |||||||||||||| Sbjct 4305856 ACCTCAACGACCGCTACGAGCTGGATGGGAGGGACCCCAACGGATACGTAGG 4305907 >seq2342 Length=2826172 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| |||||||| |||||||| || || | || |||||||| || || |||||||||| Sbjct 2270286 CTTTTTGAATATTGTAGTCAGACAGCGTGCGCCCATCTTCTAGCTGCTTACCAGCAAAAA 2270227 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 | || | ||| ||||||||||| || ||| Sbjct 2270226 TCAGTCGCTGCTGATCAGGAGGAATGCCT 2270198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151240963539776