Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1259 98.7 8e-16 seq1987 96.9 3e-15 >seq1259 Length=6625186 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| ||||||||||| || ||||||||||| | || ||| |||| Sbjct 1557820 CAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 1557761 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 1557760 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 1557701 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| || | ||||||| Sbjct 1557700 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 1557643 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || ||||| |||||||| Sbjct 1557642 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1557608 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| ||||||||||| || ||||||||||| | || ||| | || Sbjct 1557592 CAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 1557533 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 1557532 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTC 1557473 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||||| || | |||||| Sbjct 1557472 TTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATA 1557415 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || ||||| |||||||| ||| Sbjct 1557414 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 1557376 >seq1987 Length=3461734 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/240 (70%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| || | |||||| ||||| ||||| || ||||||| Sbjct 3430317 CAGTTACCACCCCTC--AGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGT 3430374 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||||| || ||| | || |||| || ||||| ||| | || |||| ||| || | Sbjct 3430375 AGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGAT 3430434 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | ||| || ||||| || || || ||| || | | | ||||| | Sbjct 3430435 CGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCACT 3430492 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||||| |||| ||||||||| || || |||| || || ||||| ||||||||||| Sbjct 3430493 GGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 3430552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405035312229280