Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1987 95.1 1e-14 seq1259 82.4 6e-11 >seq1987 Length=3461734 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| || || || |||||| || || || ||| Sbjct 3430353 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 3430412 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 3430413 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 3430472 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 3430473 ACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 3430532 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 3430533 TTCACAAAGATCTGCAT 3430549 >seq1259 Length=6625186 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || || ||| Sbjct 1557576 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 1557517 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 1557516 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTC 1557457 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | ||| | || ||||| ||||| || Sbjct 1557456 ACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTC 1557397 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 1557396 TTCACAAAGATCTGCATG 1557379 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || ||||| || || || ||| Sbjct 1557804 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCA 1557745 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 1557744 GCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1557685 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| ||||| || Sbjct 1557684 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1557625 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 1557624 TTCACAAAGATCTGCATG 1557607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420079755219264