Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1250 93.3 8e-14 seq587 91.5 3e-13 seq1145 89.7 1e-12 >seq1250 Length=5414156 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 2789504 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 2789563 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||||| || ||||| || ||||| Sbjct 2789564 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTT 2789623 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 2789624 ATTAGCAGAGATGAGG 2789639 >seq587 Length=418187 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| ||||| |||| | |||||| || Sbjct 343717 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTC 343658 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| | | || | ||| ||||||| ||| | ||||| ||||||| Sbjct 343657 TTTTCCAGTGTTCTTCTTTAAGTCAAGAAACTCAAAGATGTCCAAATGCCATGGCTCCAG 343598 Query 245128 GTAGA 245132 ||||| Sbjct 343597 GTAGA 343593 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/142 (74%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 244092 TCACC-ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 ||||| ||||||||||||||||| || || | ||| ||||| ||| ||| || ||| Sbjct 349080 TCACCTACCTGAAACTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGC 349021 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||||| || | ||||||| ||||| || || ||||| |||||||| || | Sbjct 349020 TCGATGGATTCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGG 348961 Query 244211 AGCAGACTGTTCCTCACGCCGT 244232 || || ||||| || ||||||| Sbjct 348960 AGAAGGCTGTTTCTGACGCCGT 348939 >seq1145 Length=9930023 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||| ||| | || || || ||||||||||| || ||| | || || || || || ||| Sbjct 4079201 GTAGCTTTTGCAGCAGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 4079142 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || ||||||||||||||||| || Sbjct 4079141 CTGAAGAAAAGAGGATTAATGCCTGGACTCACGTTTTCTAACGAACTCATCAGCAGAGAT 4079082 Query 42828 GAGG 42831 |||| Sbjct 4079081 GAGG 4079078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944213225150720