Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1987 104 2e-17 seq2342 82.4 7e-11 >seq1987 Length=3461734 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| ||| || ||||| | Sbjct 3430335 CGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 3430394 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || ||||| |||||| Sbjct 3430395 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 3430454 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 3430455 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATG 3430514 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || ||||| |||||||| Sbjct 3430515 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 3430549 >seq2342 Length=2826172 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 |||||||||||||||| || || |||||| ||| |||||||| || ||||| | | Sbjct 2270286 CTTTTTGAATATTGTAGTCAGACAGCGTGCGCCCATCTTCTAGCTGCTTACCAGCAAAAA 2270227 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCC 127011 ||| |||||||||||| ||||| ||||| Sbjct 2270226 TCAGTCGCTGCTGATCAGGAGGAATGCC 2270199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475437368193280