Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq221 143 4e-29 seq1510 100 4e-16 seq6019 84.2 3e-11 >seq221 Length=2647390 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || || || || ||||| || Sbjct 2556156 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 2556097 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || || |||||||| || || || Sbjct 2556096 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 2556037 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 2556036 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 2555977 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| |||||||| | | Sbjct 2555976 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCGTCAATCATC 2555917 Query 9967 TG 9968 || Sbjct 2555916 TG 2555915 Score = 132 bits (146), Expect = 7e-26 Identities = 207/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 2558207 GGAAAGCAGTGAAAGGACACCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 2558148 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 2558147 TATTGATTATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 2558088 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || || || || || | ||| | || Sbjct 2558087 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 2558028 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 2558027 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 2557968 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 2557967 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 2557912 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | ||| ||| | ||| Sbjct 2557388 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGGAAAGTG 2557329 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||| || ||||||||||| || || |||||||||||| Sbjct 2557328 TCAGGCAGAAGTGGGTGCCAGTGGTAAAGAGTATTGAACTCAGCTGCAATTCGGTTCTGG 2557269 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 2557268 TATTGAAATTGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 2557211 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 2557210 CACTCAAGTGTTGTACATA 2557192 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | ||||| ||||| | || |||| ||||| || || ||| || Sbjct 2553046 CTTACGTGTTGTACAGTTTTCCCCATAATATCCTGTCCTTGTACAGTCACATTCATACCG 2552987 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 |||||| || | ||||||||||| |||| ||||| || |||| || ||||||||||| Sbjct 2552986 ATCAAATCCTATTGTCATGCATACTCCTCTGTTCTGACATGGGTTTGAGCAGCAAGGGTT 2552927 Query 10960 GGCTGCAAT 10968 ||||| ||| Sbjct 2552926 GGCTGGAAT 2552918 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || || |||||| | ||||| || || |||| || || Sbjct 2554269 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACCGGTGGAAGGTTTCTTGTGTA 2554210 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| | |||||| ||||| | || Sbjct 2554209 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCATTATTGTAAATTGG 2554150 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 2554149 TGGGCTGTCAATCA 2554136 >seq1510 Length=3490268 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 || ||||| || ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 1108595 CCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 1108654 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| ||||||||||| || | ||| | ||||| || || || || || ||| | Sbjct 1108655 TTCAGCGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGTTGG 1108714 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| || | || | ||| || | ||| ||||| || || Sbjct 1108715 GGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCT 1108774 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| ||| || || |||| | ||| ||| || Sbjct 1108775 TCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 1108807 >seq6019 Length=351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || || |||||| | ||||| || || |||| || || Sbjct 180 ACCTTTAACACCCATTGGTGTTGGACAGTCAAGTCCTACCGGTGGAAGGTTTCTTGTGTA 239 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| | |||||| ||||| | || Sbjct 240 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCATTATTGTAAATTGG 299 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 300 TGGGCTGTCAATCA 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723631454684800