Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1987 131 4e-25 seq1259 125 2e-23 seq2342 89.7 1e-12 >seq1987 Length=3461734 Score = 131 bits (144), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| |||| || || | ||||||||| Sbjct 3430341 ACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 3430400 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| ||||| || Sbjct 3430401 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGG 3430460 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| || || || | ||| | ||| Sbjct 3430461 ATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACCTCCAAGGTGATGGTC 3430517 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || || || | ||||||| Sbjct 3430518 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATTT 3430551 >seq1259 Length=6625186 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | || || | ||||||||| Sbjct 1557588 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 1557529 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || || || ||||||||||| |||||||| Sbjct 1557528 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGG 1557469 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || |||||||||||||| | || || || ||||| | ||||| Sbjct 1557468 ATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTG 1557409 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 1557408 CCAGTCAGGGTCTTCACAAAGATCTGCAT 1557380 Score = 122 bits (134), Expect = 2e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || |||||||| || || || ||||| || | || || | ||| ||||| Sbjct 1557816 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCC 1557757 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || || ||||| ||||||||||| ||||| || Sbjct 1557756 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGG 1557697 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || || |||||||| | ||| Sbjct 1557696 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 1557640 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 1557639 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1557608 >seq2342 Length=2826172 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||||||||||||||| || | || || | ||||||||| ||||||||||| || || | Sbjct 2270286 CTTTTTGAATATTGTAGTCAGACAGCGTGCGCCCATCTTCTAGCTGCTTACCAGCAAAAA 2270227 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || || || |||||||||||| Sbjct 2270226 TCAGTCGCTGCTGATCAGGAGGAATGCCT 2270198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109329895033424