Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1145 120 3e-22 seq1250 105 8e-18 seq587 102 9e-17 >seq1145 Length=9930023 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||| |||||||| || | |||||||| | ||||||||| | Sbjct 4079078 CCTCATCTCTGCTGATGAGTTCGTTAGAAAACGTGAGTCCAGGCATTAATCCTCTTTTCT 4079137 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 4079138 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAAAG 4079197 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 4079198 CTACTACGCGTTCTCC 4079213 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||||||| || | || || | | ||||||||||||||||| |||||||| || || Sbjct 4081250 ATCTTTAATGTAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGTATATTTTCCATGGC 4081309 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | |||||||| || |||||||| Sbjct 4081310 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 4081354 >seq1250 Length=5414156 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 2789639 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2789580 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 2789579 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 2789520 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 2789519 CAACCACTCTCTCACC 2789504 >seq587 Length=418187 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| | ||||||| ||| ||||| | Sbjct 351773 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATGTGAATGT 351714 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || ||||||||||| || || ||||| || |||||||| | | ||| Sbjct 351713 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 351654 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | |||||||| ||||| ||||| | ||| || | ||| || || Sbjct 351653 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCGGG 351605 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 47902 CAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGA 47961 || ||||||||| | | ||||| | | |||||| | ||| ||||| | ||||||| Sbjct 345085 CACCTACCTCATCTTTGCTGGTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGA 345026 Query 47962 TAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAG 48021 | || ||||| || || ||||| | ||| || | ||| ||||| ||||| | | Sbjct 345025 TGGTCCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACG 344966 Query 48022 GTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 |||| || || ||| |||||||||||||||||| Sbjct 344965 GTGTGCCGGTCTCTGTCTGAGATTCAATGATAG 344933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562033814686080