Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1613 125 6e-23 seq1259 87.8 1e-11 >seq1613 Length=2230518 Score = 125 bits (138), Expect = 6e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| |||||||| || || || ||||| Sbjct 605855 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGCCAGGCTACA 605796 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||| || || ||||| || || |||||||| || || || ||| Sbjct 605795 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCGACAGCT 605736 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 |||||| | || ||||| || || ||| Sbjct 605735 GCTGCAATAGCCTATGGTCTGGACAAA 605709 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 604123 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 604064 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 604063 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 604032 >seq1259 Length=6625186 Score = 87.8 bits (96), Expect = 1e-11 Identities = 155/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| || || || |||||||| ||||| ||| | ||| || ||||| |||| || Sbjct 1557601 CCTCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGACAGG 1557544 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || || ||||| || || || ||||||||||| ||||| Sbjct 1557543 GTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 1557484 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCG 563430 ||||| || ||||| || || || || |||||| || ||| | | | ||| Sbjct 1557483 CCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCG 1557424 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | ||| || ||||| || || || || || || ||||| Sbjct 1557423 AGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1557380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028731616509280