Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq1243 134 4e-27 >seq1243 Length=9100 Score = 134 bits (148), Expect = 4e-27 Identities = 337/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 12106 TTAATTATTAACGTTCCACCACGATATTCTAAAACTGAAATTGCTGTAATTAATTTCATG 12165 ||||| |||||| | || || ||||||||||||| || |||| ||| |||| || || Sbjct 7624 TTAATCATTAACCTACCGCCTAGATATTCTAAAACCGAGCTTGCAGTAGTTAACTTTATA 7565 Query 12166 GCTTGGTGTTTTGGTAAGAATCCAGACTGTGAGTTTATTCATATCAGTTACTCGGCAATG 12225 | ||| |||||| | | || |||||||||||||| || || || || | || Sbjct 7564 TCGTGGGCGTTTGGTCAATACCCTGACTGTGAGTTTATCCACTCAAGCTATTCATC--TG 7507 Query 12226 C-TTGCCG-CAAATAATGCCTTCCAAATACGAACTCTTGTACAAGAAGAGGCGTATAGAA 12283 | ||| || |||||||| | |||||| || | ||| | || | ||| | Sbjct 7506 CATTGGCGACAAATAATTCAAGCCAAATTCGCGACATGGTATTGCACGATGAGTACAAGG 7447 Query 12284 AAGTCTTTCCTGAGCTTACAT-TGCGTGATGATAGTAAGGCTAAAGACTTCTGGAGAACT 12342 | ||||| | || ||| | |||||||| || ||||||||| ||||| ||| Sbjct 7446 CGATATTTCCAAATCTG-CATCTAAAAGATGATAGCAAAGCTAAAGACCACTGGAAAACC 7388 Query 12343 TCTCAAGGCGGTGTCTGCTATGCGACAGGTACAGGCGGTACGATTACTGGTTTTGGTGCA 12402 | || |||||||| ||||| || ||| |||| |||||||| || |||||||| || Sbjct 7387 ACGCAGGGCGGTGTAATGTATGCCACTGGTGCAGGTGGTACGATAACAGGTTTTGGCGCG 7328 Query 12403 GGAAAACTTCGTAAAGGCTTTGGTGGCTGCATTATTATTGATGACCCACATAAAGCACAT 12462 || || || | | || ||||| || || || | ||||||||||| ||||| || Sbjct 7327 GGCAAGCTAAGAGATGGTTTTGGCGGTTGTATAGCGTTGGATGACCCACACAAAGCCGAT 7268 Query 12463 GAAGCTTCATCAAAAACTATTCGAGAAGGGGTAATTGATTGGTTTCAGAACACACTCGAA 12522 ||||| | |||| || |||| || ||| |||||||| | ||| || | Sbjct 7267 GAAGCACGAAGCGAAACCATGCGAGCCAATGTTATTAATTGGTTTACCGAGACAATCAAG 7208 Query 12523 TC---GCGTACTAACTCGCCAGATACGCCGATCATTGTGATTATGCAGCGACTTCATGAA 12579 || |||| | || | | || ||||| || || |||||||| || || || || Sbjct 7207 TCAAGACGTAATGACCCAAGCAAAACCCCGATTATCGTTATTATGCAACGGCTGCACGAG 7148 Query 12580 GATGATTTAGCTGGATGGTTGCTAG 12604 |||||||| ||| | ||| ||| Sbjct 7147 AATGATTTAAGTGGTTATTTGTTAG 7123 Score = 89.7 bits (98), Expect = 1e-13 Identities = 171/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 11045 GGTGGATGGCGTAAGGCCAGACAAGAGCAACAGATGCGTGATTGGTTTGGTTTTGTACCT 11104 ||||| ||| ||||| ||||||| |||| ||||||||||||||||| ||| | | Sbjct 8601 GGTGGTTGGAAAAAGGCACGACAAGAAAAACAAATGCGTGATTGGTTTGGATTTACAACA 8542 Query 11105 ACTTATTTAATAACTGTCGACGCTTCTTTCTG-TGAGCGTGCAAACGATACA-GAGT-TC 11161 || || ||||| || | || |||| || ||| | | ||| |||| | | || | || Sbjct 8541 ACCTACTTAATCACACTAGATGCTTATTACTGCTCACAATGC--ACGACAGACGAATATC 8484 Query 11162 TGTTACTTACTTGAACATGAGCTTTACCACATTGGAGTGATGAGAGACGAGGACGGAGAA 11221 | ||| | |||| ||||| | ||||||||| || | | ||||| || || | Sbjct 8483 TAGCACTGA-TTGAGCATGAATTAGCCCACATTGGCGTTAAACGTGACGAAGATGGCAAT 8425 Query 11222 ATTGTTTATAGCGATAGTTCTGGTCTTCCTAAGCACTATCTTGCTGGTCATGACGTTGAA 11281 || | | ||| |||| | || || |||||||| ||||| || ||||||| |||| Sbjct 8424 ATGCTGTTTAGTGATATGACAGGGCTGCCTAAGCATTATCTAGCAAATCATGACATTGAG 8365 Query 11282 GAGTTT 11287 |||||| Sbjct 8364 GAGTTT 8359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145024818675264