Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1613 98.7 6e-15 seq1259 87.8 1e-11 >seq1613 Length=2230518 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 604123 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 604064 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 604063 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 604032 Score = 95.1 bits (104), Expect = 8e-14 Identities = 221/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| || ||| || || | | | ||||| || Sbjct 605375 ACTGCGTGCGAGCGTGCAAAGCGTACTCTGTCATCTAGCACGCAGGCCAGTATTGAAATT 605316 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 605315 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 605256 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | |||| || || | || | || || || ||| | | || | ||| | Sbjct 605255 CTGAACGCTGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCC 605196 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||| || ||||||| || || || || || || || || | || ||| Sbjct 605195 AAACTAGACAAATCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCA 605136 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || || | || ||||| ||| || | || | || | | Sbjct 605135 AAGATTC-AGAAACTGCTG-CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 605078 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 605077 ATCCTGATGAAGCTGTGGCCTATGGTGC 605050 >seq1259 Length=6625186 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || |||||||| ||||| |||||||| Sbjct 1557535 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTT 1557476 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| ||||| || ||| ||||| || ||| | | | || ||||| || Sbjct 1557475 GTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGAT 1557416 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||| || || || || Sbjct 1557415 AGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 1557383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267721426139456