Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2067 232 8e-56 seq2314 123 3e-23 seq1150 82.4 9e-11 >seq2067 Length=6292079 Score = 232 bits (256), Expect = 8e-56 Identities = 649/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 3036604 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 3036663 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| | |||||| || || | Sbjct 3036664 TATTGGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTTAGGTCTCCTACTCCAAAAA 3036720 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || ||||| | || || Sbjct 3036721 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACATGT 3036780 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || || | Sbjct 3036781 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAATGCATTCATGTCAGAAACATCAT 3036840 Query 160285 ATTTGTACA-TCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | ||| ||| | || ||| ||||| || || | || || | ||| | || |||||| Sbjct 3036841 ACTTG-ACACTGGAGGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 3036899 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 3036900 AGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 3036959 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | |||| || | |||| | || ||||| || || || || || || Sbjct 3036960 CTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 3037019 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | |||||| | |||||| || ||||| | || | Sbjct 3037020 ATTGGAGTACTGAGAGGCGGTAGTTGTTTGTCTGTGCCTGTGTTCTTTATTTTACCATCA 3037079 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 3037080 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 3037139 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 3037140 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 3037199 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 3037200 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 3037259 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 3037260 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 3037319 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 3037320 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 3037378 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 3037379 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 3037438 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 3037439 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 3037498 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || || || | | | | ||| || | |||||| | || Sbjct 3037499 TGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTGAA 3037558 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| ||| |||||||| ||||| Sbjct 3037559 GGAGGCACAGTCCGCTGTCATGTTAATATA 3037588 >seq2314 Length=277686 Score = 123 bits (136), Expect = 3e-23 Identities = 600/943 (64%), Gaps = 40/943 (4%) Strand=Plus/Plus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| || || || ||||| |||| |||| |||| || |||||| Sbjct 183995 CTGTGGCGCAGGTGCTCCTCGAGACACTGGATGGCGGCATCGTCCACCAGGGGGTCGAAC 184054 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | ||| || |||||| ||| || || |||| | Sbjct 184055 TTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCAAATCGCCCACCCCGTAG 184111 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | ||||||| || |||| |||| |||| |||||||| | || || || | Sbjct 184112 ATGCAGACGCTGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGGTG 184171 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || |||||||||||| || | | || | || | |||||| ||| | | Sbjct 184172 TCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTGG 184231 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || |||| | ||| || || || |||||||| || | ||||||||||| Sbjct 184232 AACTTGTCATTCTGGGGCATGGCGCCCGGCACACCGGGCATGCGGTTGAGGGTGGCCCAG 184291 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAACCT 160402 | || ||||| |||||||| ||||| || | ||| || | ||||| || || | | Sbjct 184292 ACGTACTCGTCAGGGCTGTAGGTGTCTTTGGCCCACTCGAGGAACTGCTGCG----CCGT 184347 Query 160403 G----TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGG 160458 | || | || ||||| ||| ||| | || | || | ||||||| |||| | Sbjct 184348 GGGGTTCTCAAAG-ACGTGCTGCACGAAGGCCCGCGTGATCACGATGTACGCGTTGCCTG 184406 Query 160459 AGAATATCGG-----TATGGGTATAGGCGGC-GTGTCTTTGT-CCTGACCGGTGTTAGAC 160511 ||| || || | |||| |||||| || ||| ||| ||| |||| || Sbjct 184407 TGAACATGGGAGAGTTGTGGG--GTGGCGGCAGTTTCTCTGTGGCTGTCCGG-----GAG 184459 Query 160512 ACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTT--GTGCGGTGGCA 160569 | | | | ||| |||| | | || ||| | || ||| || | || Sbjct 184460 ATGA---AGTCCCCCACTTCGTGGTGGTACTGCCAGCGCTCCTGCTTCAAGGCCGAGGGC 184516 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | | || | ||| | ||||| || | ||| ||||| ||| |||| Sbjct 184517 TTC--TCTGACTCCATGCTGTTCCGCCCCTGCAGCATCTTCAGGGCACGGACAATCTGGG 184574 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCA---TTTCG 160686 || ||||||| || || || || ||||| ||| | || ||| | ||| | | | Sbjct 184575 CATTGGTCTTGATGGGGAAATCAGTGCCGCAGGTGTTGAGCATGTAGTGCCATGGTATGG 184634 Query 160687 CGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAG 160746 |||| | ||||||| |||||| || | || ||||||| ||| |||||| | Sbjct 184635 GGCTC---TGCAACAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGG 184691 Query 160747 CGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTC 160806 | || || || || || || || ||||||||||| || ||| || | ||||| Sbjct 184692 CATAGACCACCTTTTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAGGCTACGATGG 184751 Query 160807 CCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGT 160866 || ||| ||| ||| | ||| | ||| ||| ||||| || | || Sbjct 184752 CCCGCACAGCCTCCTGGAAGGCGGCCGGGGACTTGCTGTCAGTGTGGACGCAGTAGACGT 184811 Query 160867 TCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCA 160926 |||| || ||||||| || || || | || |||||||||||| || || | ||||| | Sbjct 184812 TCTGGGGGGCGTAGAGGGACCGCAGGAGCCGCTCGAACATCTCGATTTTGTCGTGGATGA 184871 Query 160927 CGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 | || |||||||| || || ||||| | |||||| | ||||| Sbjct 184872 CCATGGAGTAGGCGATGGGGAACTCTGCCTCCTCCTGGCTCAG 184914 >seq1150 Length=638000 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 176201 GTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTC 176260 ||| || |||| ||| | || || || | ||||||| | | || || | || ||| Sbjct 531765 GTACATCTTGTTATTTTTGTCAAGCATCAGAAGATATTCTGCCAGCTCTCTGGGGGAGAG 531706 Query 176261 ATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGA 176320 | |||| | ||||||||||| | || || ||||||||| || ||||| |||| |||||| Sbjct 531705 AAAATCTTCCACATGTATAAAAGAGTCTGCTGGAATGTAATTCTCATAGTTTTCTCTGGA 531646 Query 176321 GGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGAT 176380 || || | || | |||||| | | || | || | ||| | || || | || Sbjct 531645 AGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAAAGCATTGTAAAGTTTCTCAGTAAT 531586 Query 176381 GTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 ||| || |||| ||||| |||||||| | | ||||| || || Sbjct 531585 GTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAGAATTTGCA 531541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577142198958720