Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_020841.1 Length=40803 Score E Sequences producing significant alignments: (Bits) Value seq738 271 2e-68 >seq738 Length=20194 Score = 271 bits (300), Expect = 2e-68 Identities = 356/488 (73%), Gaps = 10/488 (2%) Strand=Plus/Plus Query 6626 TATATCCATTTCAATCGCCGCTTGCTGTGG---CTGATTGTCTGCATACTCAT-AAGACT 6681 || || |||||| || || ||||||||| ||| |||||| |||| || || ||| Sbjct 17875 TAAATTCATTTCGATAGC---TTGCTGTGGTCGCTGGTTGTCTTCATAG--ATGAAAACT 17929 Query 6682 -GTTGACCATTAACATCGCGAATGACTGCCTGGTCTGCTTCCACCGCTTGCGCCAATGTT 6740 | | |||| ||||| | || || || |||||||||| || ||| ||||| | Sbjct 17930 TGCTCGCCATCTACATCATGGATAACGGCTTGGTCTGCTTGTACGGCTGTTGCCAAAGGC 17989 Query 6741 GGCACGATTGACAACGGCGCTTGTTTGCTTAAAAGCAGCTTGATGACTGTTTTTTGAGCC 6800 | | || || ||||| || |||||||||| || | |||||| || |||||||||||| Sbjct 17990 GTATCAATGGATAACGGTGCCTGTTTGCTTAGTAGTAACTTGATAACCGTTTTTTGAGCC 18049 Query 6801 ATAGCATCAAAATTATCCTTCCAAACACCAAAACCGCCTTTAAATGACTGGCTGTACTGC 6860 || |||||||| ||||| ||||| || ||||| || ||| | |||||||||| Sbjct 18050 ATGGCATCAAAGTTATCTTTCCATACTCCAAAGCCTTTTTTTGCGGTTTGGCTGTACTTT 18109 Query 6861 TTAGCGTGCTCGTTTATTTCTTTGTTTGTCATTGCTATATGCGCTTCAAAACCGTTCAGT 6920 | || ||| | |||| ||||| | ||||||| | ||||||||| | || || || Sbjct 18110 TGAGAGTGAGCATTTAGTTCTTCAATACTCATTGCAAGGTGCGCTTCATAGCCATTGAGC 18169 Query 6921 AATTGGAAGTAAGCGATATATCCAGTAACATCACCTTTTGGCTCTTTTGGCAAAAAGGCA 6980 || || || || |||||||| ||||| | | |||| |||||| ||||||||| ||| | Sbjct 18170 AACTGAAAATATGCGATATAACCAGTGATTTGACCTGTTGGCTTTTTTGGCAATAAGCTA 18229 Query 6981 GTTAGTCGCTCAAAAACTGATTGCTCGGTATCTTCTGAATAAGTTTTGCAAGCACTAATA 7040 || | |||||| |||||| |||||||| || || || ||||| |||||| | || Sbjct 18230 GTCAAACGCTCATAAACTGTCTGCTCGGTGTCATCCGAGTAAGTAGCACAAGCATTGATG 18289 Query 7041 CGCTTAAACTGACCACTGCGCTGTGCAAGCTGAATAAATCCCTTATAACCAAGCTGAAAC 7100 |||||||| ||||| || || || || || |||||||| || ||||| ||||||||||| Sbjct 18290 CGCTTAAATTGACCGCTACGTTGCGCGAGTTGAATAAAACCTTTATAGCCAAGCTGAAAT 18349 Query 7101 TGAGCATC 7108 || || || Sbjct 18350 TGCGCCTC 18357 Score = 84.2 bits (92), Expect = 6e-12 Identities = 250/376 (66%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 5973 TTGTAGCGGTATCTGATTG-ACCAGTTCGACGTGCTCATACTCATCATCGTTATAGCC-- 6029 |||||||||||| |||| |||| || | || ||| | |||||||| || || Sbjct 17213 TTGTAGCGGTATG-GATTCCACCATGTCTATATGGTCAAATTCATCATCCC-ATGGCTTT 17270 Query 6030 AAGCAAGCTATGAGGGGTAGGGAGTAGCACAAAGTCCACGTAATGCACTTTTTTACCCCA 6089 ||||| | | |||||| || |||| | |||||| | ||| ||| |||| |||| Sbjct 17271 AAGCACTCG-TAAGGGGTGGGTAGTAAGATAAAGTCAATGTAGGCAACTGGTTTATCCCA 17329 Query 6090 TAGCTCCATATAGACTTGACCTTGCCAATCATAGCCACCGTCTTTGACCTTTTGCACAGC 6149 ||| ||||||| |||| |||||| ||||| ||| ||||| |||| | || Sbjct 17330 AAGCCACATATAGCCTTGCATTTGCCAGTCATAACCATATTCTTTAGCCTTGTTTTGTGC 17389 Query 6150 GTCGTCATGTGTCCAAGGGAAACTGTCAATTGACCATGAGCACTTGGTATCTCGTATGCT 6209 ||| || ||| ||| | | ||| ||||| |||||| ||||||||||| Sbjct 17390 GTCTTCTATAAACCATGGGTGAGTATCACGCGACCAACTACACTTGATATCTCGTATGGC 17449 Query 6210 GTCATCAGTCAGTAAGTCGCACTCACCACTAAACCAT---TCATTGCTTTTGCGCTCAGT 6266 ||||| || || | ||||| ||||| || |||| | ||||| | | || || Sbjct 17450 TTCATCGGTAAGCACATCGCATTCACCTTGAATCCATGGGTTATTGCGT---CTTTCTGT 17506 Query 6267 GTTTTTTGATAACTTG---ACCGCCT-TTAGCAGACTAACAGCTTTGATTGCGTCATCTT 6322 ||||| ||||| | | |||| | |||| | ||| || || || |||||| ||| Sbjct 17507 GTTTT----TAACTGGCAAAGTGCCTGTGAGCAATCCAACTGCCTTAATAGCGTCACCTT 17562 Query 6323 CTAGCGCCAAGCCTTT 6338 | || ||||||||| Sbjct 17563 CAAGTAGCAAGCCTTT 17578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130431468324960