Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1145 84.2 3e-11 seq1250 82.4 9e-11 >seq1145 Length=9930023 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 || ||| ||||||| |||||||| ||||||||||| || || || |||||||| ||| Sbjct 4077874 AAAGCGGAGAATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAGACCAATTTC 4077815 Query 65494 TTTGAGAAGCGAGTTGGGGACTAT 65517 |||||||||||||| || || ||| Sbjct 4077814 TTTGAGAAGCGAGTAGGTGAATAT 4077791 >seq1250 Length=5414156 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| ||||| || || || |||||||| || || || || ||| ||||| | |||| Sbjct 2789517 TTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTT-TGCTGCTATATTTTGG 2789575 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 |||||||| |||| || ||||| || || ||||| |||||||||||| | ||||| Sbjct 2789576 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAGAT 2789635 Query 65206 GAGG 65209 |||| Sbjct 2789636 GAGG 2789639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596490017615360