Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq755 331 1e-85 seq1613 201 1e-46 seq1259 197 2e-45 seq1987 181 1e-40 seq1510 100 4e-16 seq2342 95.1 2e-14 >seq755 Length=1706996 Score = 331 bits (366), Expect = 1e-85 Identities = 1031/1582 (65%), Gaps = 33/1582 (2%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| || || || || ||||| || || ||||| | || ||| Sbjct 561811 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGCGTGGGTGTCTTTCAGCATGGCAAA 561752 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || ||||| || Sbjct 561751 GTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACC 561692 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || || || || || || ||| || |||||||||| ||| Sbjct 561691 GATACAGAGCGCCTCATCGGTGACGCTGCCAAGAACCAGGTGGCGATGAACCCTACCAAC 561632 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| || || ||||||| | || | || || Sbjct 561631 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 561572 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | || || || | ||||| ||||| | | | | Sbjct 561571 GACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAGGGTGGC----AAGCCCAAGGTGCA 561516 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | ||||||| ||| | || |||| || || || || ||||| Sbjct 561515 AGTGGAGTACAAGGGTGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 561457 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||||| || || | | |||| | ||| | |||| || Sbjct 561456 TTACCAAGATGAAGGAGATCGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCA 561397 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || ||||||||||||| ||| || || || ||||| || || || |||| | | Sbjct 561396 TCACGGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 561337 Query 195777 TTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 | | || || ||| | | ||||||||||| || ||||| ||||| || || |||| Sbjct 561336 TCACTGGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATG 561277 Query 195837 GTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | |||||||||| | || | ||| || || || | |||||||| | || | Sbjct 561276 GCTTGGACAAGAAGGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACTTGGGAG 561217 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | || || || ||||| || | || | ||||| | ||| || || || || ||| | | Sbjct 561216 GGGGCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCA 561157 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGT 196010 | |||||||| || ||||| ||||| || || || || || | | ||||| Sbjct 561156 CAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTG 561097 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTC 196070 || || ||| || ||| | ||| || ||| |||| || | || | | | Sbjct 561096 TGGAAGAATTCAAGCGTAAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGC 561037 Query 196071 GGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTC---TCTTCTACGGCTCAAACAA 196127 | || | || || ||||| | || || || |||||| ||||| ||| ||| | | Sbjct 561036 GACTGCGTACGGCTTGTGAGAGGGCGAAGCGCACTCTCAGCTCTTCCACG---CAAGCTA 560980 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 |||||||||| || | | || || ||||||||||| || | ||||| ||||| | Sbjct 560979 GCATTGAGATTGACTCCCTTTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCC 560920 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 | ||||| ||| | || ||||| | || | |||| || || || | | | Sbjct 560919 GCTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCTC 560860 Query 196248 TTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAA 196307 | || || || ||| | || ||| || | | || || || || ||||| || || | Sbjct 560859 TGCGCGATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCTA 560800 Query 196308 CCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACA 196367 ||||||| || ||||| ||| || |||| ||||||||| ||||| | |||| Sbjct 560799 CCCGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAACGGCAAAGAGCTCAACA 560740 Query 196368 AAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCT 196427 | | |||||||| ||||| || ||||||||||| || || || || || ||||| || Sbjct 560739 AGAGCATCAACCCTGATGAGGCTGTTGCTTATGGCGCTGCTGTGCAAGCAGCTAT--CCT 560682 Query 196428 CAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTAT 196484 || | | ||||| | | ||||| || ||||| ||||| | ||||| | || | | Sbjct 560681 CATG-GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGT 560623 Query 196485 CCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTA 196544 || |||| | || ||||| ||||| || ||||| | || | | ||||| || | Sbjct 560622 CCTTGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCATCAAGCGCAACACCACCA 560563 Query 196545 TTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGTTCAT 196603 |||| || || | || ||| | || || || || || || | || | || | Sbjct 560562 TTCCCACCAAACAAACTCAGACCTTCACCACCTACTCGGACAACCAGAGCA-GCGTCCTG 560504 Query 196604 ATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACT 196660 | || || || || | |||| ||| || | ||||| ||| | | || || | Sbjct 560503 GTCCAGGTGTACGAGGGTGAGAGGGCT---ATGACGAAGGACAACAACTTGCTGGGCAAA 560447 Query 196661 TTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTC 196720 || || | ||||| || || | |||||| | || || || ||||| | || || Sbjct 560446 TTTGACCTTACGGGCATCCCCCCGGCACCCCGCGGAGTCCCCCAGATCGAGGTCACTTTT 560387 Query 196721 GATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCT 196780 || || || || ||||| || || ||||||| |||| ||||||| | || || Sbjct 560386 GACATCGATGCCAATGGTATCCTGAACGTCAGCGCTGTGGACAAGAGCACGGGTAAGGAG 560327 Query 196781 GAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATG 196840 | ||||| || |||||||||||||| || ||| ||||| || ||||| |||||| Sbjct 560326 AACAAGATCACCATCACCAATGACAAGGGTCGCCTTAGCAAGGATGACATTGACCGTATG 560267 Query 196841 GTTCAAGATGCGGAAAAGTACA 196862 || ||||| ||||| || |||| Sbjct 560266 GTGCAAGAAGCGGAGAAATACA 560245 >seq1613 Length=2230518 Score = 201 bits (222), Expect = 1e-46 Identities = 368/539 (68%), Gaps = 0/539 (0%) Strand=Plus/Minus Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 ||||| | |||||||| || || |||||||| |||||||| ||| |||| | ||||||| Sbjct 605588 AATGTTCTTATCTTTGACCTTGGAGGTGGTACCTTTGATGTGTCAATTCTGACTATTGAA 605529 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 | ||| || || || || || | ||||| ||||| ||||| | ||||| ||||| || Sbjct 605528 GATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTT 605469 Query 195986 GATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATT 196045 || || | || || || || ||||||| || ||| | |||||||| || Sbjct 605468 GACAACCGCATGGTCAACCACTTCATTGCTGAGTTCAAGCGCAAGCACAAGAAAGACATC 605409 Query 196046 TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACT 196105 | || || || ||||||| || | ||||| || || ||||| || || ||| Sbjct 605408 AGCGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACTGCGTGCGAGCGTGCAAAGCGTACT 605349 Query 196106 CTCTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 || || |||| | || | | |||| |||||||| | | ||| || ||||||||| Sbjct 605348 CTGTCATCTAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTC 605289 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGT 196225 || ||| | |||||| | || || ||||||||| | ||| |||| |||| | Sbjct 605288 TACACATCCATTACCAGAGCTCGCTTTGAAGAGCTGAACGCTGACCTGTTCCGTGGCACC 605229 Query 196226 ATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAA 196285 |||| ||||| ||| | | || || || || || | || || || || | |||| Sbjct 605228 CTGGATCCTGTGGAAAAGGCCCTGCGGGATGCCAAACTAGACAAATCGCAGATCCATGAC 605169 Query 196286 ATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTC 196345 || || || || || || || || ||||| || |||||||| | |||| ||| Sbjct 605168 ATCGTGCTGGTTGGTGGGTCTACTCGTATCCCAAAGATTCAGAAACTGCTGCAGGATTTC 605109 Query 196346 TTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 |||||| ||||| | ||||| | ||||| || |||||||| || || |||||||| Sbjct 605108 TTCAATGGCAAAGAGCTGAACAAGAGCATCAATCCTGATGAAGCTGTGGCCTATGGTGC 605050 Score = 111 bits (122), Expect = 2e-19 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| ||| || || || ||||| ||||| || | Sbjct 605848 ATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGCCAGGCTACAAAAGATG 605789 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 ||| | ||||| || || || ||| || |||||||||| || || ||||| |||||| Sbjct 605788 CTGGAACCATTGCAGGGCTCAA-TGTACTGCGAATTATCAACGAGCCGACAGCTGCTGCA 605730 Query 195827 ATTGCTTATGGTCTGGACAAGAA 195849 || || |||||||||||||| || Sbjct 605729 ATAGCCTATGGTCTGGACAAAAA 605707 Score = 95.1 bits (104), Expect = 2e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 ||||||||||||||||| | | || | ||||| ||| | | || || | || || | Sbjct 604186 GTATATGAAGGAGAACG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 604128 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || ||||| |||| ||||||||||| || |||||| | || ||| ||||| || Sbjct 604127 GACTGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGA 604068 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || || || | |||| ||| ||| ||||||| | ||||| Sbjct 604067 TGCCAATGGCATCCTGAATGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAAGAT 604008 Query 196789 TGTGATTACCAATGACAAGGG 196809 ||| || ||||||||||| Sbjct 604007 CACGATAACAAATGACAAGGG 603987 >seq1259 Length=6625186 Score = 197 bits (218), Expect = 2e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || ||||||||||||||||||||| | Sbjct 1557380 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACTATCACCCTCGAGGTTGAGCCTAGT 1557439 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| ||||| |||||||||||||| || |||||| Sbjct 1557440 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCTGATCAG 1557499 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| |||| |||||| Sbjct 1557500 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 1557559 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || ||||| || | || ||||||| Sbjct 1557560 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1557606 Score = 179 bits (198), Expect = 5e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||||| ||||| || || |||||||| ||||||||| | Sbjct 1557608 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1557667 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || |||||||||||||| || |||||| Sbjct 1557668 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1557727 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| ||||| || || ||||| |||| |||||| Sbjct 1557728 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 1557787 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || ||||| || | || ||||||| Sbjct 1557788 ATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGG 1557834 >seq1987 Length=3461734 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| ||| | ||||| || || |||||| | ||||||||| | Sbjct 3430549 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTTGAGCCCAGT 3430490 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || || |||||||||||||| ||||||||| Sbjct 3430489 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 3430430 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | || || |||||||| || ||||| |||||||| || ||||| | || |||||| Sbjct 3430429 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 3430370 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||| || || || || ||||| || | || |||||||| Sbjct 3430369 ATCCAGAAGGAATCCACCCTGCATCTTGTGCTGCGCCTGAGGGGTGGT 3430322 >seq1510 Length=3490268 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 196637 AAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGT 196696 |||||||||||||| || |||||||| ||| | || || || || |||| || | ||| Sbjct 2942 AAGGATAACCATCTTCTGGGAACTTTTGATCTCACTGGAATCCCTCCTGCCCCTCGTGGT 3001 Query 196697 GTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCT 196756 || || ||||| | ||| ||| || ||||| | || ||||| || ||||||||| Sbjct 3002 GTCCCCCAGATCGAAGTTACCTTTGAAATAGATGTGAACGGAATCCTCCGTGTCACAGCT 3061 Query 196757 GAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTT 196816 || ||||||| |||| || | ||||| |||||| ||||| || ||||| Sbjct 3062 GAAGACAAGGGCACTGGGAACAAAAACAAGATCACGATTACAAATGATCAGAATCGGCTG 3121 Query 196817 TCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGT 196859 | || || ||||| | |||||| | ||||| || |||| Sbjct 3122 ACACCAGAAGAGATTGAGAGGATGGTTAACGATGCTGAGAAGT 3164 >seq2342 Length=2826172 Score = 95.1 bits (104), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| |||||||||||||| ||||| |||||||| || Sbjct 2270198 AGGCATTCCTCCTGATCAGCAGCGACTGATTTTTGCTGGTAAGCAGCTAGAAGATGGGCG 2270257 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| ||||| ||||||| Sbjct 2270258 CACGCTGTCTGACTACAATATTCAAAA 2270284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657774641155840