Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1259 131 2e-25 seq1987 129 6e-25 seq587 100 3e-16 >seq1259 Length=6625186 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || || ||| | ||| || ||||| Sbjct 1557811 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 1557752 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| || || || |||||||||||||| |||||| Sbjct 1557751 CTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 1557692 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 1557691 GGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 1557632 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 1557631 CAGGGTCTTCACAAAGATCTGCATG 1557607 Score = 122 bits (134), Expect = 8e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| ||||| || ||||| || || ||| | || || ||||| Sbjct 1557583 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 1557524 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| || || || |||||||||||||| |||||| Sbjct 1557523 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCTTGGATCTT 1557464 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||| | | ||||| ||||| | ||||| || |||| ||||| || ||||| || Sbjct 1557463 GGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATAGTCTTGCCAGT 1557404 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || || || ||||||||| Sbjct 1557403 CAGGGTCTTCACAAAGATCTGCATG 1557379 >seq1987 Length=3461734 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | |||||| || ||||| || ||||| ||| || ||| | || || ||||| Sbjct 3430346 ATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 3430405 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| |||||| ||||| || |||||||||||||| |||||| Sbjct 3430406 CTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 3430465 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 3430466 GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCAGT 3430525 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 3430526 CAAGGTCTTCACAAAGATCTGCAT 3430549 >seq587 Length=418187 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | |||||||||||||||||||| |||| ||||| |||||| Sbjct 345062 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 345003 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| | |||||| | ||| |||||||||||||||||| ||| || || Sbjct 345002 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTC 344953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483356311665280