Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2067 138 1e-27 seq2314 93.3 5e-14 >seq2067 Length=6292079 Score = 138 bits (152), Expect = 1e-27 Identities = 577/903 (64%), Gaps = 22/903 (2%) Strand=Plus/Plus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || || ||| || || || || || || ||||| || || ||||| Sbjct 3036693 ATCCAGTTTAGGTCTCCTACTCCAAAAACACAGACAGAGCGAACGTGAACTCCACTGCAT 3036752 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | || || || || |||| |||||||| || ||||| Sbjct 3036753 GGTGGGTAGGGTGCACCTTTGGACATGTCACCTTCAAAGTACTGCCACTTGACAAACCTG 3036812 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACTGACGGCA-CGGCTCCAGGAAC 162338 | | || | |||||| || || |||||| |||||| || | | || || || || Sbjct 3036813 GCCAATGCATTCATGTCAGAAACATCATACTTG-ACACTGGAGGAAACTGCACCCGGGAC 3036871 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || |||||||||| || ||||| || || || || || | Sbjct 3036872 TTCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGC 3036931 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||||| | | |||| | | || | ||| || | || Sbjct 3036932 CCACTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATACGTATTCTACAAATCTTCT 3036988 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || | | ||| Sbjct 3036989 GCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGCGGTAGTTGTTT 3037048 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || || ||||||| | Sbjct 3037049 GTCTGTGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTAC 3037108 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 3037109 TTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 3037164 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | |||||||| |||| ||||| || | Sbjct 3037165 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTTA 3037224 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || ||| ||||| | | ||||| | || |||| Sbjct 3037225 TTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCT 3037284 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || || || || ||||| ||| ||| | ||||||||| | Sbjct 3037285 GCACCCTGCTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACATTAT 3037344 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTAT 162868 | ||||| || ||||| ||| |||| || || | || | || || ||| | | Sbjct 3037345 CAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGT 3037401 Query 162869 CTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACA 162928 | || || | |||||| | |||||||||||| ||||| | || || | ||| || | || Sbjct 3037402 CAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGATCTTAGAAGTCTATCAAGCA 3037461 Query 162929 TCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGAC 162988 |||| || || || | ||||| || || || || || || || || || || || | Sbjct 3037462 TCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTGC 3037521 Query 162989 TGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGT 163048 |||||| | ||| ||| || | | | || | ||||||||| | ||||||| Sbjct 3037522 TGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTGAAGGAGGCACAGTCCGCTGTCATGT 3037581 Query 163049 TAA 163051 ||| Sbjct 3037582 TAA 3037584 >seq2314 Length=277686 Score = 93.3 bits (102), Expect = 5e-14 Identities = 180/264 (68%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 162722 ACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGC 162781 |||| ||||| | ||||| || |||||||| | || ||| || || || || || Sbjct 184644 ACAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCATAGACCACCT 184703 Query 162782 TCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841 | |||| | | || |||||||||||| ||| || | || || || ||| ||| Sbjct 184704 TTTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAGGCTACGATGGCCCGCACAGCCT 184763 Query 162842 GTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGC 162899 ||| | | || | || || || ||| |||||||| | ||||| ||||| Sbjct 184764 CCTGGAAGGCGGCCGGG--GACTTGCTGTCAGTGTGGACGCAGTAGACGTTCTGGGGGGC 184821 Query 162900 GTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATA 162959 ||||| || || ||| | | |||||||||||| || || | ||| | || || || || Sbjct 184822 GTAGAGGGACCGCAGGAGCCGCTCGAACATCTCGATTTTGTCGTGGATGACCATGGAGTA 184881 Query 162960 CGCTATGGGGAACTCAGCCTCCTC 162983 || ||||||||||| |||||||| Sbjct 184882 GGCGATGGGGAACTCTGCCTCCTC 184905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578354837171200