Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1685 123 8e-25 seq1448 98.7 3e-17 seq359 84.2 7e-13 seq6166 78.8 3e-11 >seq1685 Length=2211204 Score = 123 bits (136), Expect = 8e-25 Identities = 71/73 (97%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1065156 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 1065097 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 1065096 CCCGGGCTTCAGC 1065084 Score = 114 bits (126), Expect = 4e-22 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| Sbjct 1048987 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCAAG 1049046 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 1049047 CCCGGGCTTCAGC 1049059 >seq1448 Length=2544240 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1367017 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1367076 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1367077 CCGGGTTTCGGC 1367088 >seq359 Length=117659 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 ||| ||||||| ||||||||| |||| |||||| ||| ||||||||||||||||||| || Sbjct 4606 AAGCAGCTCAGCTGGGAGAGCCTTAGGCTGAAGGTCTGAAGGTCCCTGGTTCAACCCAGG 4547 Query 2833 GCTT 2836 |||| Sbjct 4546 GCTT 4543 >seq6166 Length=361 Score = 78.8 bits (86), Expect = 3e-11 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 2798 GACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847749955440