Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1613 223 1e-52 seq755 183 9e-41 seq1259 143 8e-29 seq1987 123 8e-23 seq1510 104 7e-17 seq2342 93.3 1e-13 seq1145 84.2 7e-11 >seq1613 Length=2230518 Score = 223 bits (246), Expect = 1e-52 Identities = 383/549 (70%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| ||||||| ||||| | || |||||||| |||||||| ||| | || || Sbjct 605594 GAAAGGAATGTTCTTATCTTTGACCTTGGAGGTGGTACCTTTGATGTGTCAATTCTGACT 605535 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || ||||| || ||| | ||||| ||||| || || | ||||||||| Sbjct 605534 ATTGAAGATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAA 605475 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || ||||| || || | || || || || || || ||||| ||||| || | Sbjct 605474 GACTTTGACAACCGCATGGTCAACCACTTCATTGCTGAGTTCAAGCG-CAAGCACAAGAA 605416 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || || | || || |||||| | |||||||| | |||||||| || ||||| || Sbjct 605415 AGACATCAGCGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACTGCGTGCGAGCGTGCAAA 605356 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| | | ||||||| || || || |||||||||||||||||| ||| || | Sbjct 605355 GCGTACTCTGTCATCTAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTAT 605296 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTT 350116 || |||| |||| ||||| | ||||| |||||||| || | | || || || Sbjct 605295 TGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGA--GCTGAACGCTGACCTGTTC 605238 Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176 | | || |||||||||||||||| | | ||||| ||| | |||| ||| Sbjct 605237 CGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCCAAACTAGACAAATCGCAG 605178 Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || |||| | || | |||||||| ||||| ||||| ||||| |||| | | || Sbjct 605177 ATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCAAAGATTCAGAAACTGCTG 605118 Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 || || || ||||||||||| | | ||| | || ||||| ||||||||||| || Sbjct 605117 CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGC 605059 Query 350296 ATATGGTGC 350304 |||||||| Sbjct 605058 CTATGGTGC 605050 Score = 136 bits (150), Expect = 1e-26 Identities = 354/532 (67%), Gaps = 6/532 (1%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | | ||||||||||| Sbjct 605048 CTGCACCATAGGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCATTG 605106 Query 183321 AA-AAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 || |||| ||| | ||| || ||||| ||||| || | ||| || ||||| || | || Sbjct 605107 AAGAAATCCTGCA-GCAGTTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCAC 605165 Query 183380 TACTTCATCGATATTACTTTTA-CTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438 | |||| ||| | ||| ||| |||| | ||| | | ||||| ||||| | Sbjct 605166 GATGTCATGGATCTGCGATTTGTCTAGTTTG-GCATCCCGCAGGGCCTTTTCCACAGGAT 605224 Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498 ||| || | || | || | |||||| || | ||||| || | |||| Sbjct 605225 CCAGGGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATG 605284 Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558 | ||||||||||| | ||| | |||||||||||||| | || || |||| Sbjct 605285 TGTAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGATG 605344 Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618 | | || | || || || || || || || | || ||||| | || ||| || | Sbjct 605345 ACAGAGTACGCTTTGCACGCTCGCACGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 605404 Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTG 183678 | | || |||| || || || | || || |||| ||| || || | | | | Sbjct 605405 CGCTGATGTCTTTCTTGTGCTTGCGCTTGAACTCAGCAATGAAGTGGTTGACCATGCGGT 605464 Query 183679 TATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTC 183738 | ||||| ||||| ||||| || || || || || ||||| | ||| || ||||| || | Sbjct 605465 TGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGC 605524 Query 183739 CGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 | ||||||||| | | |||||| |||||||| |||||||| || | ||||| Sbjct 605525 CATCTTCAATAGTCAGAATTGACACATCAAAGGTACCACCTCCAAGGTCAAA 605576 Score = 114 bits (126), Expect = 4e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | ||||||||||||||||| ||||| | ||||| || Sbjct 605858 ACTGTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGCCAGGCT 605799 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | ||||| || |||| || || || || || Sbjct 605798 ACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCGACA 605739 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| ||||| || ||||| || || |||| Sbjct 605738 GCTGCTGCAATAGCCTATGGTCTGGACAAAA 605708 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 606117 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGACCAAAA 606061 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| || || || || || | ||| | ||| ||||| ||||||||||| || || Sbjct 606060 GTCCAGGTGGAGTACAAGGGCGAG-ACAAAGAGTTTCTACCCAGAAGAAATTTCTTCTAT 606002 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||| ||||||||| Sbjct 606001 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 605965 >seq755 Length=1706996 Score = 183 bits (202), Expect = 9e-41 Identities = 507/770 (66%), Gaps = 12/770 (2%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||| || ||||| || ||| | || | || ||||||| || || Sbjct 561451 AAGATGAAGGAGATCGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCATCACG 561392 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || || || || ||||| ||||||| || || ||||||||||||| ||| | Sbjct 561391 GTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCATCACT 561332 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || | | || || ||||| ||||| || || || || || ||||| | Sbjct 561331 GGCCTTAACGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGGCTTG 561272 Query 349742 GATAAAATGAGTGACC------AAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || | | || || ||| || || | || || ||||| || || || || Sbjct 561271 GACAAGAAGGGTACCCGGGCTGGAGAGAAGAACGTGCTCATCTTTGACTTGGGAGGGGGC 561212 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 ||||| ||||| || | || || |||| || || || ||||| || || | || ||| Sbjct 561211 ACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCACAGCT 561152 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || ||||| ||||| || || ||||| || || | || |||||||| || Sbjct 561151 GGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGGAA 561092 Query 349916 GAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCT 349974 ||||| |||||| |||| || ||| |||| | || |||| || | || || Sbjct 561091 GAATTCAAGCGT-AAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGCGACT 561033 Query 349975 AAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACCTCTATTG 350033 | || || ||||| | || ||||| | || | | ||| | || ||| | |||| Sbjct 561032 GCGTACGGCTTGTGAGAGGGCGAAGCGCACTCTCAGC-TCTTCCACGCAAGCTAGCATTG 560974 Query 350034 AAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTG 350093 | ||||| || ||| || |||| || |||| | || ||||| ||||| || |||| Sbjct 560973 AGATTGACTCCCTTTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCGCTTTG 560914 Query 350094 AAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAG 350153 | || | | ||||| || | | || |||| || ||||| || | | | Sbjct 560913 AGGAGCTCAATGCTGATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCTCTGCGCG 560854 Query 350154 ATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTA 350213 |||| || | ||| ||||| | || | || | || ||||| ||||| |||| Sbjct 560853 ATGCCAAGCTAGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCTACCCGTA 560794 Query 350214 TTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCA 350272 | || || | ||| || | ||| || || || || |||||||| | | | ||| | Sbjct 560793 TCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAACGGCAAAGAGCTCAACAAGAGC- 560735 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT 350322 || || || ||||| |||||||| ||||| |||||||| || ||| |||| Sbjct 560734 ATCAACCCTGATGAGGCTGTTGCTTATGGCGCTGCTGTGCAAGCAGCTAT 560685 >seq1259 Length=6625186 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || ||||| || || || || || ||||| | || ||||||||| Sbjct 1557591 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1557532 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||||||||| ||||| ||||| || || Sbjct 1557531 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCT 1557472 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 1557471 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTGATAGTC 1557412 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 1557411 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1557380 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || ||||| || || || || || ||||| | || ||||| ||| Sbjct 1557819 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 1557760 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 1557759 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 1557700 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 1557699 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1557640 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 1557639 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1557608 >seq1987 Length=3461734 Score = 123 bits (136), Expect = 8e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || || || || || || || || || | || ||||||||| Sbjct 3430338 AGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 3430397 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 3430398 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 3430457 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | ||| || ||||| || | || | ||| Sbjct 3430458 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTC 3430517 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | || || ||||| ||||||||| Sbjct 3430518 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 3430550 >seq1510 Length=3490268 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | |||||||| ||||| || || || ||| | || || ||| | Sbjct 1993 ATTGATGAGATTGTTCTTGTTGGTGGCTCTACTCGCATCCCCAAAATACAGCAATTAGTT 2052 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| ||||| |||||| | |||||||||||||| ||||| || Sbjct 2053 AAAGAGTTCTTCAATGGGAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCC 2112 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||| ||||| Sbjct 2113 TATGGTGCGGCTGTCCAGGC 2132 >seq2342 Length=2826172 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 ||||||||||||| || ||||| | || ||||||||||| || || || |||||||| | Sbjct 2270286 CTTTTTGAATATTGTAGTCAGACAGCGTGCGCCCATCTTCTAGCTGCTTACCAGCAAAAA 2270227 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||| ||| Sbjct 2270226 TCAGTCGCTGCTGATCAGGAGGAATGCCT 2270198 >seq1145 Length=9930023 Score = 84.2 bits (92), Expect = 7e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | ||| || ||||| || | |||||||||||| ||||| | Sbjct 4079075 ATACCTCATCTCTGCTGATGAGTTCGTTAGAAAACGTGAGTCCAGGCATTAATCCTCTTT 4079134 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| || |||| Sbjct 4079135 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAA 4079194 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 4079195 AAGCTACTA 4079203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515047211689616