Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq1814 138 1e-27 >seq1814 Length=2962848 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| |||| | |||||||||| ||||||||| | ||||| | |||||||| Sbjct 2887823 GCTTTATGGTGGTATTATGTCTCTAAAGGAATAGAATATTTGGATACAGTATTCTTCATC 2887882 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||| ||||||||||||||| |||| || | || || || |||||||| |||||||| Sbjct 2887883 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 2887942 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || || | ||||| || ||||| ||| ||||||| ||||| Sbjct 2887943 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGCGGACA 2887983 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/125 (75%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 32826 GGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTAT 32885 |||||| | ||||||||||| ||||| ||| | ||||| ||||| || ||||| | ||| Sbjct 2890189 GGACAG-CTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTAT 2890247 Query 32886 TACGGATTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTA 32945 ||||||||| | || || ||| || | ||||| || ||||||||| ||| ||| Sbjct 2890248 TACGGATTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTA 2890307 Query 32946 ACTAT 32950 || || Sbjct 2890308 ACCAT 2890312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603100335681280