Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq2314 205 1e-47 seq6929 143 4e-29 >seq2314 Length=277686 Score = 205 bits (226), Expect = 1e-47 Identities = 659/1009 (65%), Gaps = 34/1009 (3%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGT 13659 |||| || || ||| ||||||||||| |||||| |||| | | | || ||| Sbjct 184988 CGCCCGGCGAGTACCTGAACATGACGAAGGACTGCAGCAGCTTCAAGGAGACCCGGCGGT 184929 Query 13660 ATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGA 13719 | | | || ||||||| ||| |||| ||||| |||||||||||||| || || | Sbjct 184928 TCATTGAGTTCCCGCTGAGCCAGGAGGAGGCAGAGTTCCCCATCGCCTACTCCATGGTCA 184869 Query 13720 TCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACC 13779 ||||| |||| ||||||||||||||||| |||||| || || |||||||||| |||||| Sbjct 184868 TCCACGACAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCCCTCTACGCCCCCCAGAACG 184809 Query 13780 TCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG-GGC-GTCTCGGC 13837 |||||||||||||| ||| ||||||| | || ||| | || ||| || ||| Sbjct 184808 TCTACTGCGTCCACACTGACAGCAAGTCCCCGGCCGCCTTC--CAGGAGGCTGTGCGGGC 184751 Query 13838 CATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGG 13897 ||||| |||||||| || || |||| ||| ||| | | ||||| || | Sbjct 184750 CATCGTAGCCTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGC 184691 Query 13898 CTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGT 13957 ||||||| || ||||||||||||||| ||||||| ||||||| |||| | Sbjct 184690 CTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCAT 184631 Query 13958 CAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGA 14017 ||| ||| |||||||| ||||| | || ||||| |||||||||| | Sbjct 184630 ACCATGGCACTACATGCTCAACACCTGCGGCACTGATTTCCCCATCAAGACCAATGCCCA 184571 Query 14018 GATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC 14077 ||| || || || |||||| ||| || |||| | ||||| ||| | ||| Sbjct 184570 GATTGTCCGTGCCCTGAAGATGCTGCAGGGGCGGAACAGCATGGAGTCAGAG---AAGCC 184514 Query 14078 CAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGG--CCAGCGGCGGCGTGGTG 14135 | | || | | ||||| || | ||| | ||| | || |||| | Sbjct 184513 C--------TCGGCCTTGAAGCAGGA----GCGC-TGGCAGTACCA-CCACGAAGTGGGG 184468 Query 14136 G---TCAACACC--GGCAGGAACA-AGGCCCCGCCGCCGCTCAGGATC---CCCATCTTT 14186 | ||| | || | ||| ||| || | |||||| | | | | ||||| || Sbjct 184467 GACTTCATCTCCCGGACAGCCACAGAGAAACTGCCGCCACCCCACAACTCTCCCATGTTC 184408 Query 14187 GCGGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAG 14246 | || ||||| ||| | | | |||| |||| |||||| | |||| | || || Sbjct 184407 ACAGGCAACGCGTACATCGTGATCACGCGGGCCTTCGTGCAGCACGTCTTTGAGAACCCC 184348 Query 14247 CCGGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGG 14306 ||| | | | || | | ||| | | ||||| |||||||| |||||| || | ||| Sbjct 184347 ACGGCGCAGCAGTTCCTCGAGTGGGCCAAAGACACCTACAGCCCTGACGAGTACGTCTGG 184288 Query 14307 GCCACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGAC 14366 |||||| | | | ||| ||| ||| || | || ||| | | ||||| | | Sbjct 184287 GCCACCCTCAACCGCATGCCCGGTGTGCCGGGCGCCATGCCCCAGAATGACAAGTTCCAG 184228 Query 14367 ACCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATC 14426 |||||||||| ||| | | | | ||||||||||| ||| ||||| || | | Sbjct 184227 CTCTCGGACATGAACGCCCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACC 184168 Query 14427 AAGAAAGGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTC 14486 | || || || | |||||||| ||| |||| ||| | | | ||||||||| | Sbjct 184167 AGCAAGGGCGCGCCCTACCCGCCCTGCACCGGCCAGCACCAGCGCAGCGTCTGCATCTAC 184108 Query 14487 GGGTCCGGCGACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGA 14545 ||| ||||| || ||| || ||| | | ||||| || |||||||||||||| Sbjct 184107 GGGGTGGGCGATTTGCCCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGA 184049 Query 14546 CGACGAGACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | | | |||||| |||| | | ||||| || ||| || ||||| Sbjct 184048 CCCCCTGGTGGACGATGCCGCCATCCAGTGTCTCGAGGAGCACCTGCGC 184000 >seq6929 Length=425 Score = 143 bits (158), Expect = 4e-29 Identities = 256/369 (69%), Gaps = 16/369 (4%) Strand=Plus/Plus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 || ||||| |||||| || ||| || |||||| |||||| |||||||| ||| Sbjct 3 TTCCCCATTGCCTACG---TCATGACCCTGCACAAGGAGTTCGAGACCTTCGAGCGGCTC 59 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC--CG 13809 | ||||| | ||| || || ||| |||||||| ||||||||||| ||||| | || Sbjct 60 TTCAGGGCGGTGTACATGCCCCAAAACATCTACTGCATCCACGTGGACGCCAAGGCGCCG 119 Query 13810 GCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTCCCTAACGTGGCCC 13866 || | | ||||| |||| |||| | | | | |||||||| || | || Sbjct 120 GCCCC-----CTTCCGGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTCCCCAATGCCTTCC 174 Query 13867 TGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCA 13926 | ||| |||| | | ||||| |||||| | ||| ||| |||||||||| Sbjct 175 TCGCCTCCCGGGCGGAGCGGGTGGTCTACGGCGGCGCCTCCCGCCTGCGGGCCGACCTCC 234 Query 13927 GCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCG 13986 ||||||| ||||||| ||||| |||| ||| |||||||||||| |||| Sbjct 235 ACTGCATGAGGGACCTGCTGGCCTCGGCCGTGCCCTGGCACTACCTGCTCAACACCTGCG 294 Query 13987 GGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCG 14046 | ||||||||| | |||||||||| ||||||||| ||| |||||||| ||| || | Sbjct 295 GCCAGGACTTCCCCTTGAAGACCAACCGGGAGATCGTCCGGCTGCTGAAGGGCCTCGGGG 354 Query 14047 GCAAGAACG 14055 | ||||||| Sbjct 355 GGAAGAACG 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658651324190720