Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2171 123 2e-23 seq1561 91.5 1e-13 >seq2171 Length=8303823 Score = 123 bits (136), Expect = 2e-23 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 7513605 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 7513546 Query 30283 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 ||||| || ||| |||| ||| ||| ||| |||| ||||| | || || || || | Sbjct 7513545 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAAGTCACGTGATCCATTAGCAT 7513487 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| ||||| || ||||| ||||||||||||||| ||||| || || || || || | Sbjct 7513486 CCCAAATCTTCACACCCTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 7513429 Query 30402 ACAG 30405 |||| Sbjct 7513428 ACAG 7513425 >seq1561 Length=752264 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 173074 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGACGATTCTTCTCAGGA 173133 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 173134 ATGGAGAACCAGGTTTTTTTACCCATTATCAGGGCATTCTGTTTACCT 173181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406257553237824