Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq937 426 5e-115 >seq937 Length=2348 Score = 426 bits (472), Expect = 5e-115 Identities = 666/945 (70%), Gaps = 8/945 (1%) Strand=Plus/Minus Query 40764 ATCAAGTAAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG 40823 ||||||||| ||| |||||| || | ||||| ||||||||||||||||| || || | Sbjct 2348 ATCAAGTAACGTTTGCATCGGGGTACGCCCACAACACATTTTTCCTTGATGAGTACGCTC 2289 Query 40824 GTGATTATAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAAATCCG--TA 40881 | ||| || | ||||||| |||| || | || || | | || | || Sbjct 2288 ATTATTGTAGAAGTTTAACCAAATGTCTAGGTCAGACTGCAACTGC--TCAAGCGAACTA 2231 Query 40882 TAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGT 40941 || | || || ||||| | |||||||||||| || || || || |||||||| ||||| Sbjct 2230 TACAGATTTTTTCTAAACGTCACTTGGTAAAACTCCTGCAAAATCGTTTTATGAAACCGC 2171 Query 40942 TCGCAGATACCATTCGTCTGGGGATGCTTCA-CTTTCGTTTTCGTATGCTCTATGTCATT 41000 ||||| |||||||| || ||||| || | ||||||| || ||||| || || ||||| Sbjct 2170 TCGCAAATACCATTGGTTTGGGG-TGAGCGAGCTTTCGTCTTGGTATGTTCGATATCATT 2112 Query 41001 TATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCG 41060 || |||||||| || || ||||| || ||||||||||| |||||||| || | |||| Sbjct 2111 AATGGCTAAATACAGTTCGTAATCATGGTTTTCTACCTTACCACAATACTCTGTGCCTCT 2052 Query 41061 GTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATC 41120 || ||||| || | | ||| || ||| | || || | || | ||||| || ||||| Sbjct 2051 ATCGGTTAAAATTCTCAGCATTGGCAAATCATGCTCTTGATAGAACGGTAATACCTTATC 1992 Query 41121 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAAC-GCCA 41179 ||| || ||||| || | | |||| | ||| || | ||||| || || |||| |||| Sbjct 1991 ATTAAGTATATCGGCTGAAGTGATTGGGGTTTTGGTGGTATACAGCTT-GCAATGAGCCA 1933 Query 41180 CTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGC 41239 | || || |||||||| | || || || |||||||| || || || ||||| | || | Sbjct 1932 CCTTGCTATAAGTATCTACGAAGGTCTGCTGATAAATGCGTCCTACGCCTTTTAAATTAC 1873 Query 41240 CCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCAC 41299 |||||||||| |||||||| ||||||||||||||||| || | ||||| |||||||||| Sbjct 1872 CCACATAGAAGGTATCTTGCGAGCCAAGATAGCCAGGATGAGCGGTTTCGATTTCACCAC 1813 Query 41300 AGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAA 41359 |||| || ||||||||||| || ||| | ||| || |||| || |||| |||| Sbjct 1812 AGGCGATGTCATCTTCTTTTTTCTTCTCAAGGGCGACAACTTGTGATTTGGTGAGAATAA 1753 Query 41360 TACCTTGTTCTGCAACCAGTTTTTCCAGGGCGATTAATCTTTGCTTAAAATTGGCAAGAT 41419 | || | ||| || | ||| ||||| | | | || | || || | || | Sbjct 1752 TGCCATCAGTTGCTACTTTGTCTTCTAGGGCTTTGAGACGTTTTCTGAAGTTCTCTAGGT 1693 Query 41420 GATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGA 41479 || |||| ||| || ||||| || || | | ||| || || | || |||| || | Sbjct 1692 CATTGCGTAGCCAGATTGAACGAACGCCACTGGGTGAGACGAATACACCAAGTTTGCGTA 1633 Query 41480 GTTCGTTACTCACTCTTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAG 41539 |||| || |||| || |||||| | || |||| |||| ||| |||| | |||| Sbjct 1632 GTTCATTGGATGCTCTGACTTGTCCATACGCTGGGTAGTCAATGGCATACTTGATGACAG 1573 Query 41540 CTTGCTCTATTGCCTCATCAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCA 41599 | | || | |||||||| || || ||||| | ||||| || ||||| | || | Sbjct 1572 CGTCTTCGGTGGCCTCATCCACTCGGTTTTTAAGATTGGGTACTCGTCTTGAACGGTTGA 1513 Query 41600 GCAATGCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGC 41659 | || || ||||| |||||||| || || ||| ||||| ||||| |||||||| Sbjct 1512 TTAGGGCATCGACACCGCCTTGCTCCGCCATTTCTTGGTAACGGTAGAAGGTATCTCGTG 1453 Query 41660 TCATTCCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTT 41704 | ||||| ||||||||||||| || | ||| |||||||| Sbjct 1452 ATACACCCATGACTTTGCAGGCTTTGGATACATTTTGCAGTTCTT 1408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166702071168864