Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1145 131 1e-25 seq1250 107 2e-18 >seq1145 Length=9930023 Score = 131 bits (144), Expect = 1e-25 Identities = 110/134 (82%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | |||||||| || ||||||||||||||||| | ||| |||||||| || Sbjct 4079071 ATTCATACCT-CATCTCTGCTGATGAGTTCGTTAGAAAACGTGAGTCCAGGCATTAATCC 4079129 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| |||||||| || || Sbjct 4079130 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGC 4079189 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 4079190 TGCAAAAGCTACTA 4079203 Score = 98.7 bits (108), Expect = 8e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || ||||| |||||||| |||||||||||||| || ||| Sbjct 4081251 TCTTTAATGTAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGTATATTTTCCATGGCA 4081310 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | ||||||||| | ||| ||||| Sbjct 4081311 ATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 4081354 >seq1250 Length=5414156 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 2789637 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2789578 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 2789577 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 2789518 Query 4692 AC 4693 || Sbjct 2789517 AC 2789516 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| | |||| || | |||||| ||||| || || ||||||||||||||||| |||| || Sbjct 2784823 AAAGCCTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 2784764 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 |||| || |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 2784763 CATGGGAGATAAAGTATTTTTCATCTGCTTTGAGCTTGTTCCAGTGAGGAAGGTCCTTTG 2784704 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 2784703 ACAAATCAAC 2784694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426994055793776