Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1145 116 5e-21 seq587 105 9e-18 seq1250 89.7 7e-13 >seq1145 Length=9930023 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | |||||||||||| ||||| || ||||||| ||| | ||| || Sbjct 4079080 TCATCTCTGCTGATGAGTTCGTTAGAAAACGTGAGTCCAGGCATTAATCCTCTTTTCTTC 4079139 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| |||||||| || || ||||| || Sbjct 4079140 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAAAGC 4079198 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 4077771 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 4077830 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| || || |||||||| || ||||| ||||| Sbjct 4077831 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4077865 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| ||| || || || | ||| || |||||||| || || |||||||| || || Sbjct 4081250 ATCTTTAATGTAGGTGTCAATAAGAAGGCTGTACATTTCTGAATGTATATTTTCCATGGC 4081309 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | ||||||||||| ||||| || Sbjct 4081310 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 4081354 >seq587 Length=418187 Score = 105 bits (116), Expect = 9e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||| ||||| ||||||||||| ||||| || |||| || || |||| || || || Sbjct 343723 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 343664 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| ||||| || ||||| |||||| || |||||||| | || || ||||||||| Sbjct 343663 CTCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 343605 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || || || || | | | ||||||| Sbjct 343604 GCTCCAGGTAGATGGCAAAAGCCCCAGGTC 343575 Score = 93.3 bits (102), Expect = 6e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 349071 TGAAACTCTCCCGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCGATGGAT 349012 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || || || ||||| || ||||||||||||||||||||||| || Sbjct 349011 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 348968 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 351773 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATGTGAATGT 351714 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || ||||| |||||||||||||| || || ||||| || | || || | Sbjct 351713 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 351654 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||| || | ||||| |||| Sbjct 351653 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCGGGAA 351603 >seq1250 Length=5414156 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 2789637 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2789578 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 2789577 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 2789519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694576131182080