Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1250 107 3e-18 seq1145 107 3e-18 seq587 93.3 6e-14 >seq1250 Length=5414156 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || || || || || |||||||| || || | ||| || Sbjct 2789637 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2789578 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| |||||||| || || || || || Sbjct 2789577 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 2789518 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 2789517 ACCACTCTCTCACC 2789504 >seq1145 Length=9930023 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | |||||||||||| ||||| |||||||||| ||| | || || Sbjct 4079080 TCATCTCTGCTGATGAGTTCGTTAGAAAACGTGAGTCCAGGCATTAATCCTCTTTTCTTC 4079139 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || ||||| ||||||||||| |||||||| || || || || || Sbjct 4079140 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACTGCTGCAAAAGCT 4079199 Query 46774 AC 46775 || Sbjct 4079200 AC 4079201 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || ||||||||||| || ||||| || ||||| || ||||| Sbjct 4077770 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 4077829 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || |||||||| || ||||| ||||| Sbjct 4077830 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4077865 >seq587 Length=418187 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 351773 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATGTGAATGT 351714 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || ||||| |||||||||||||| || || ||||| || | || || | Sbjct 351713 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 351654 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | || ||||| | || || | | ||| || | ||||| |||| Sbjct 351653 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCGGGAA 351603 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 76597 AACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG 76656 ||| || ||||| ||||||||||| ||||| || |||| || || |||| || || | Sbjct 343723 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 343664 Query 76657 TTCTTCATTTCCTGTATTCTT-TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715 ||||| ||||| || ||||| |||||| || || ||||| | || || ||||||||| Sbjct 343663 CTCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 343605 Query 76716 GTTCTAGATATATCGCCATAACACCCGGTC 76745 | || || || || || | | | || |||| Sbjct 343604 GCTCCAGGTAGATGGCAAAAGCCCCAGGTC 343575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712839294551040