Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq108 178 9e-40 >seq108 Length=2301 Score = 178 bits (196), Expect = 9e-40 Identities = 417/627 (67%), Gaps = 2/627 (0%) Strand=Plus/Minus Query 59129 AGCTTGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCAGGTGCATC 59188 || |||||||| || || || || || || || ||||| || | |||| ||||||| Sbjct 2034 AGTTTGGTTTCACCCAGATCTCGAATCCGAGGGGCGAATTTAAACTCCAGCAAGTGCATC 1975 Query 59189 AGGGCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGG 59248 | |||||| || || ||||| || || || || |||||||| || || || | | || Sbjct 1974 AAGGCAAACACATGGTCGGTAAAACCTGCGGTATCGGTGTAATGTTCTTCCACCTTCAAA 1915 Query 59249 TCGGACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGCGGACGCCGACATTC 59308 || || || || ||||||| || || | |||||||| || || || | || ||||| Sbjct 1914 TCTGATTCATGATACAGCAACCCATCCAATACATAGGTTGACTCTCGAATACCCACATTA 1855 Query 59309 ACCACGCGGGTGCTGAACGGCGC-GTACTGGTCGGAGATATGGGTATAGAACAGCCGTCC 59367 | || || |||| | || ||| ||||| || | ||||||||||| || | || Sbjct 1854 ATCA-GCTTACTATGAAACGGGCTGTATTGGTCAGAAACATGGGTATAGACAAGTCTGCC 1796 Query 59368 CGGCTCGCTACCGTACTTCGGGTTGACGTGCCCGGTGCTCTCGCCCCGGCCACCCGCGCG 59427 || || ||| ||||| ||||||| ||||| ||||| | | | || || || || Sbjct 1795 AGGTTCTGAACCATACTTTGGGTTGATATGCCCTGTGCTTTGGGCACGACCGCCTGCTTT 1736 Query 59428 GAAGCGCTGGCCATCGGAGGATGAGGTCGTGCCGTCGCCCCAGTGGGCGGCAAAGGCGTG 59487 ||||| || ||||| || |||||||| || || |||||||||| |||||| | | Sbjct 1735 AAAGCGTTGCCCATCTGAAGATGAGGTTGTACCATCGCCCCAGTTATGTGCAAAGTCATT 1676 Query 59488 GCGATACTGGTGGTTGACCAGCTCGGCCAAGGCCGCCGAATAGGTTTCGTCGCGGATGTG 59547 | | ||| || ||| | | | || | || |||||||||||| ||||| | Sbjct 1675 GGTCAATTGGGCATTCGTAAGCACACCGAGTGCTGACGCATAGGTTTCGTCACGGATATA 1616 Query 59548 CCAGGCTTGCAGCCAGGACAGCTTGGCGTAGGTCAGGCCGGGGCTCGACTCGGCCATCTT 59607 ||| ||||| ||||| | || || | | ||| || |||| || || ||||| || Sbjct 1615 CCACGCTTGTAGCCAAGCAAGTTTAGATTCGGTGGCACCAGGGCAGGATTCTGCCATTTT 1556 Query 59608 GGTCAGCCCGAGGTTGATCGCATCACCGAGGATTGCGGACAGCAGCAACGTCCTGTCTTT 59667 | | | || | || || |||||| | || | || || || | | ||||| Sbjct 1555 GCTATGTCCTAAATTAATGCCATCACTTAAAATGGTGGCAAGAAGTAGGTATTTATCTTT 1496 Query 59668 GGCCTCGGCCCCGTCCTTCAAGTGGGTGAAGTGGCGGCTGAAGCCCGTCCAGTCGTCCAC 59727 ||| | | || |||||||| || || ||| || || ||||| || || || Sbjct 1495 GGCTGTTTCATCTGTTTTTAAGTGGGTAAACTGATTGCTAAACCCTGTCCACTCATCAAC 1436 Query 59728 GTCCATCAGCAGTTCGGTGATCTTGAT 59754 |||| |||| ||| |||||||| || Sbjct 1435 TTCCAAAAGCAATTCAGTGATCTTAAT 1409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330856161595552