Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1259 141 7e-29 seq1987 129 4e-25 >seq1259 Length=6625186 Score = 141 bits (156), Expect = 7e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| || || || ||| |||||| ||||||||||| || | Sbjct 1557834 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1557775 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| ||||||||||| || |||||||||| | ||||||||||| || Sbjct 1557774 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 1557715 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | |||||||| ||| ||||| ||||| | | |||||||| || || ||| Sbjct 1557714 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 1557655 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | || || ||||| || || ||||||||||| ||||| |||||| Sbjct 1557654 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1557607 Score = 127 bits (140), Expect = 1e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||| || || || ||| |||||| ||||||||||| || Sbjct 1557610 CATGCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 1557551 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || |||| | || ||||||||||| || |||||||||| | ||||||||| | Sbjct 1557550 AGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGG 1557491 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| ||||| | | |||||||| | || Sbjct 1557490 GGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTC 1557431 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| | || || ||||| || || ||||||||||| ||||| |||||| || Sbjct 1557430 AACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 1557376 >seq1987 Length=3461734 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || ||| || || || ||| ||||| ||||||||||| |||| Sbjct 3430323 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 3430382 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| | || ||||||||||| || |||||||||| | ||||||||| | || Sbjct 3430383 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 3430442 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| || | | |||| | |||||||| || || || Sbjct 3430443 ATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 3430501 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || || | ||||||||| ||||| ||||| Sbjct 3430502 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 3430549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359943577848624