Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aptenodytes_20forsteri_20[refseq_20GCF_5F000699145.1_202014-06-06] 10,672 sequences; 1,254,347,440 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1259 140 3e-28 seq1987 129 5e-25 >seq1259 Length=6625186 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | ||| |||||||| ||| ||||||||| ||||| ||||| Sbjct 1557838 ACAGCCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 1557779 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||||||| |||| || ||||||||||| || || ||||| | ||| || || | Sbjct 1557778 AGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 1557719 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || ||||||||| ||| || ||||| | | ||||| || | ||| Sbjct 1557718 GGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 1557659 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || ||||| ||||| || || ||||||||| Sbjct 1557658 AACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1557607 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| ||||||||| ||||| ||||| || ||||||||| Sbjct 1557597 AGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1557538 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 1557537 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 1557478 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||||| | | ||||| || | ||| ||||| | || Sbjct 1557477 TTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTAGGCTCAACCTCGAGGGTG 1557418 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || ||||||||||| Sbjct 1557417 ATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1557377 >seq1987 Length=3461734 Score = 129 bits (142), Expect = 5e-25 Identities = 165/225 (73%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| |||||||| ||||| |||||||| ||||||||| Sbjct 3430332 AGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 3430391 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 3430392 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 3430451 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || ||||| || | ||| ||||||| Sbjct 3430452 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAA 3430507 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || |||| ||||| || || |||||||| || Sbjct 3430508 GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 3430552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462242328646400